miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32281 3' -51.5 NC_007023.1 + 92161 0.66 0.985521
Target:  5'- gAUAGCAUCGCguUCugacauuGCCAUUAUCg -3'
miRNA:   3'- -UAUUGUGGCGguAGuau----CGGUGGUAG- -5'
32281 3' -51.5 NC_007023.1 + 121093 0.66 0.985343
Target:  5'- --cACACUGCCAUgAUGGuaaguuaCCACCAg- -3'
miRNA:   3'- uauUGUGGCGGUAgUAUC-------GGUGGUag -5'
32281 3' -51.5 NC_007023.1 + 1119 0.67 0.981625
Target:  5'- cGUuuCACCGUCuUCuGUAGUCugCAUCa -3'
miRNA:   3'- -UAuuGUGGCGGuAG-UAUCGGugGUAG- -5'
32281 3' -51.5 NC_007023.1 + 76032 0.68 0.958012
Target:  5'- --uACAUgucaCGaCCAUCAUAGCCGCCcgUg -3'
miRNA:   3'- uauUGUG----GC-GGUAGUAUCGGUGGuaG- -5'
32281 3' -51.5 NC_007023.1 + 66722 0.69 0.940611
Target:  5'- aGUAACAgUGCCAUgAU-GCCGCCGc- -3'
miRNA:   3'- -UAUUGUgGCGGUAgUAuCGGUGGUag -5'
32281 3' -51.5 NC_007023.1 + 11994 0.69 0.930385
Target:  5'- -aAGCACCGCgCAUCAaccguGCgCugCAUCg -3'
miRNA:   3'- uaUUGUGGCG-GUAGUau---CG-GugGUAG- -5'
32281 3' -51.5 NC_007023.1 + 166385 0.7 0.919125
Target:  5'- uUGAUACCaaCCAUCcc-GCCGCCAUCu -3'
miRNA:   3'- uAUUGUGGc-GGUAGuauCGGUGGUAG- -5'
32281 3' -51.5 NC_007023.1 + 116586 0.83 0.310664
Target:  5'- uUAACACCGCCGUCAUacagcgGGUCACCAg- -3'
miRNA:   3'- uAUUGUGGCGGUAGUA------UCGGUGGUag -5'
32281 3' -51.5 NC_007023.1 + 151237 1.08 0.00859
Target:  5'- cAUAACACCGCCAUCAUAGCCACCAUCu -3'
miRNA:   3'- -UAUUGUGGCGGUAGUAUCGGUGGUAG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.