miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32283 3' -42.6 NC_007023.1 + 178263 0.67 1
Target:  5'- uGCCAAUCGGUAagcguaaaGGCGaagugaUUGCa -3'
miRNA:   3'- -UGGUUAGCUAUaaaaug--CCGCa-----AACG- -5'
32283 3' -42.6 NC_007023.1 + 179692 0.68 1
Target:  5'- cACCAGUC------UUGCGGCGUUgauucggUGCu -3'
miRNA:   3'- -UGGUUAGcuauaaAAUGCCGCAA-------ACG- -5'
32283 3' -42.6 NC_007023.1 + 170436 0.67 1
Target:  5'- -gCAAUUGGUGUga-ACGGUGUgcguaUGCa -3'
miRNA:   3'- ugGUUAGCUAUAaaaUGCCGCAa----ACG- -5'
32283 3' -42.6 NC_007023.1 + 165187 0.66 1
Target:  5'- uACCGAUCGAaAUUUaGCGaCGg--GCa -3'
miRNA:   3'- -UGGUUAGCUaUAAAaUGCcGCaaaCG- -5'
32283 3' -42.6 NC_007023.1 + 89432 0.67 1
Target:  5'- -aCAA-CGGgcg-UUGCGGCGUUUGa -3'
miRNA:   3'- ugGUUaGCUauaaAAUGCCGCAAACg -5'
32283 3' -42.6 NC_007023.1 + 167601 0.67 1
Target:  5'- cGCguAUCGAgcuUUUUA-GGCGUgaUUGCg -3'
miRNA:   3'- -UGguUAGCUau-AAAAUgCCGCA--AACG- -5'
32283 3' -42.6 NC_007023.1 + 96461 0.69 0.999999
Target:  5'- -gUAAUCGGUucg-UGCGGC-UUUGCg -3'
miRNA:   3'- ugGUUAGCUAuaaaAUGCCGcAAACG- -5'
32283 3' -42.6 NC_007023.1 + 79416 0.69 0.999998
Target:  5'- cACCGAUCGAgaaau--CGGCGUgucGUa -3'
miRNA:   3'- -UGGUUAGCUauaaaauGCCGCAaa-CG- -5'
32283 3' -42.6 NC_007023.1 + 113435 0.71 0.999987
Target:  5'- aACUcgGAUCGGUGUcgauCGGUGUUUGUu -3'
miRNA:   3'- -UGG--UUAGCUAUAaaauGCCGCAAACG- -5'
32283 3' -42.6 NC_007023.1 + 7633 0.72 0.999955
Target:  5'- aACgGAUCGGgg--UUGCGGC-UUUGCu -3'
miRNA:   3'- -UGgUUAGCUauaaAAUGCCGcAAACG- -5'
32283 3' -42.6 NC_007023.1 + 132558 0.72 0.999892
Target:  5'- gACCuacGUCGAUAUagaacacACGGCGUUcaggUGCg -3'
miRNA:   3'- -UGGu--UAGCUAUAaaa----UGCCGCAA----ACG- -5'
32283 3' -42.6 NC_007023.1 + 169697 1.15 0.038902
Target:  5'- aACCAAUCGAUAUUUUACGGCGUUUGCu -3'
miRNA:   3'- -UGGUUAGCUAUAAAAUGCCGCAAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.