miRNA: 3'- uauGCGCAuUAUAGGACCGCCG--CGUa -5'
miRNA: 3'- uaUGCgCAUUAUAGGAC-CGCCGCGua -5'
miRNA: 3'- uaugCGCAuuAUAGG----ACCGCCGCGUa -5'
miRNA: 3'- -UAUGCGCAUUAUaGGACCGccgCGUA- -5'
miRNA: 3'- -UAUGCGCAUUAUAGGACCGCCGCGUA- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 32285 | 3' | -53.8 | NC_007023.1 | + | 52542 | 0.66 | 0.95492 |
|
Target: 5'- --gUGCGU-AUGUUCUGGCGGCugGUAa -3' miRNA: 3'- uauGCGCAuUAUAGGACCGCCG--CGUa -5' |
|||||||
| 32285 | 3' | -53.8 | NC_007023.1 | + | 114726 | 0.66 | 0.946465 |
|
Target: 5'- -cACGgGUAGUAUUCUGcGUGGUGUu- -3' miRNA: 3'- uaUGCgCAUUAUAGGAC-CGCCGCGua -5' |
|||||||
| 32285 | 3' | -53.8 | NC_007023.1 | + | 5244 | 0.68 | 0.889289 |
|
Target: 5'- ---aGCGU--UGUCUcucaUGGCGGCGCAc -3' miRNA: 3'- uaugCGCAuuAUAGG----ACCGCCGCGUa -5' |
|||||||
| 32285 | 3' | -53.8 | NC_007023.1 | + | 131200 | 0.69 | 0.867385 |
|
Target: 5'- aAUACGCGUGAUGcCCUGGUa--GCAUg -3' miRNA: 3'- -UAUGCGCAUUAUaGGACCGccgCGUA- -5' |
|||||||
| 32285 | 3' | -53.8 | NC_007023.1 | + | 1935 | 1.04 | 0.008651 |
|
Target: 5'- cAUACGCGUAAUAUCCUGGCGGCGCAUg -3' miRNA: 3'- -UAUGCGCAUUAUAGGACCGCCGCGUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home