miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32286 3' -46.3 NC_007023.1 + 47022 0.66 0.999979
Target:  5'- gGCGCUCUguugguugGGUGUGCugAAAAGCCCC-Ca -3'
miRNA:   3'- -UGUGGGGa-------UUAUAUG--UUUUUGGGGaG- -5'
32286 3' -46.3 NC_007023.1 + 149241 0.66 0.999979
Target:  5'- -aACCCCguuAUGUGCAGGAAUCgCg- -3'
miRNA:   3'- ugUGGGGau-UAUAUGUUUUUGGgGag -5'
32286 3' -46.3 NC_007023.1 + 158873 0.66 0.999979
Target:  5'- uGCAgCCa--GUAUACGAAcGCCCCg- -3'
miRNA:   3'- -UGUgGGgauUAUAUGUUUuUGGGGag -5'
32286 3' -46.3 NC_007023.1 + 150148 0.66 0.999961
Target:  5'- cCGCCCUUGAc--ACAAAAAUCCUUUu -3'
miRNA:   3'- uGUGGGGAUUauaUGUUUUUGGGGAG- -5'
32286 3' -46.3 NC_007023.1 + 125054 0.68 0.999564
Target:  5'- cACugCCCUAA-AUACAaauagggGAAACCCUa- -3'
miRNA:   3'- -UGugGGGAUUaUAUGU-------UUUUGGGGag -5'
32286 3' -46.3 NC_007023.1 + 19418 0.68 0.999466
Target:  5'- aGCACCgaUGAUAaGCAuAAGCCCCa- -3'
miRNA:   3'- -UGUGGggAUUAUaUGUuUUUGGGGag -5'
32286 3' -46.3 NC_007023.1 + 13741 0.69 0.998982
Target:  5'- -aACCUCaAAgggGCAAAAGCCCCUa -3'
miRNA:   3'- ugUGGGGaUUauaUGUUUUUGGGGAg -5'
32286 3' -46.3 NC_007023.1 + 153092 0.71 0.995616
Target:  5'- cAUACCCaaCUAAcuUACAAAAaaGCCCCUUg -3'
miRNA:   3'- -UGUGGG--GAUUauAUGUUUU--UGGGGAG- -5'
32286 3' -46.3 NC_007023.1 + 157603 0.72 0.991935
Target:  5'- gUAUgUgUAAUAUaACAAAAGCCCCUCa -3'
miRNA:   3'- uGUGgGgAUUAUA-UGUUUUUGGGGAG- -5'
32286 3' -46.3 NC_007023.1 + 125281 0.73 0.980025
Target:  5'- uACACCCCaacAUAUAUAGGGuuuCCCCUa -3'
miRNA:   3'- -UGUGGGGau-UAUAUGUUUUu--GGGGAg -5'
32286 3' -46.3 NC_007023.1 + 75673 0.76 0.940409
Target:  5'- aACACCUCUGAUuuuuUGCGA--ACCCCUg -3'
miRNA:   3'- -UGUGGGGAUUAu---AUGUUuuUGGGGAg -5'
32286 3' -46.3 NC_007023.1 + 79113 0.84 0.597336
Target:  5'- gUACCCCUAAUAUaACAAAAGCCCUa- -3'
miRNA:   3'- uGUGGGGAUUAUA-UGUUUUUGGGGag -5'
32286 3' -46.3 NC_007023.1 + 100769 0.87 0.422079
Target:  5'- aACACCCCcAAUAUaGCAAAAGCCCCUg -3'
miRNA:   3'- -UGUGGGGaUUAUA-UGUUUUUGGGGAg -5'
32286 3' -46.3 NC_007023.1 + 67244 1.12 0.018777
Target:  5'- aACACCCCUAAUAUACAAAAACCCCUCg -3'
miRNA:   3'- -UGUGGGGAUUAUAUGUUUUUGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.