Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32294 | 3' | -50.7 | NC_007023.1 | + | 81279 | 0.66 | 0.995846 |
Target: 5'- cGACGGUaacAAAGCaCCGAuuaaccguaucaaCGCUGGCGa -3' miRNA: 3'- -UUGUCAaacUUUUG-GGCU-------------GCGACCGC- -5' |
|||||||
32294 | 3' | -50.7 | NC_007023.1 | + | 15779 | 0.68 | 0.985644 |
Target: 5'- aAACAGgcUGAAAACCUGcguCGUUGGg- -3' miRNA: 3'- -UUGUCaaACUUUUGGGCu--GCGACCgc -5' |
|||||||
32294 | 3' | -50.7 | NC_007023.1 | + | 57770 | 0.69 | 0.974635 |
Target: 5'- cGCGGUUUGAAAAgCUGGCuaaUGGUGg -3' miRNA: 3'- uUGUCAAACUUUUgGGCUGcg-ACCGC- -5' |
|||||||
32294 | 3' | -50.7 | NC_007023.1 | + | 149434 | 1.08 | 0.011836 |
Target: 5'- gAACAGUUUGAAAACCCGACGCUGGCGa -3' miRNA: 3'- -UUGUCAAACUUUUGGGCUGCGACCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home