miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32296 3' -60 NC_007024.1 + 25471 0.67 0.452815
Target:  5'- aCGCCaagGGGCGUGAcgGCCgaCCGUcaacaacaCGCCa -3'
miRNA:   3'- -GCGGga-UUCGCGCUa-CGG--GGCA--------GCGG- -5'
32296 3' -60 NC_007024.1 + 8137 0.69 0.308888
Target:  5'- gGCCU--GGCGau-UGCCaCCGUUGCCg -3'
miRNA:   3'- gCGGGauUCGCgcuACGG-GGCAGCGG- -5'
32296 3' -60 NC_007024.1 + 9174 0.69 0.338598
Target:  5'- gGCCgUcAGGCcgGCGAUGCCguacuuguuggaaCCGUCGUCg -3'
miRNA:   3'- gCGGgA-UUCG--CGCUACGG-------------GGCAGCGG- -5'
32296 3' -60 NC_007024.1 + 21417 0.68 0.396964
Target:  5'- aCGCUgU-AGCGUGAugaagcagcucguUGCaucuugCCCGUCGCCa -3'
miRNA:   3'- -GCGGgAuUCGCGCU-------------ACG------GGGCAGCGG- -5'
32296 3' -60 NC_007024.1 + 8804 0.68 0.397843
Target:  5'- uGCCCUGGaa-CGAguUGCCcgugCCGUCGCCg -3'
miRNA:   3'- gCGGGAUUcgcGCU--ACGG----GGCAGCGG- -5'
32296 3' -60 NC_007024.1 + 7794 0.67 0.414788
Target:  5'- uGgUCUGGGUGCGGUGauugaccaggccuUCCaCGUCGCCc -3'
miRNA:   3'- gCgGGAUUCGCGCUAC-------------GGG-GCAGCGG- -5'
32296 3' -60 NC_007024.1 + 33643 0.67 0.415693
Target:  5'- gGCCCgAAGCaGcCGAUgaagGCCCCuggCGCCg -3'
miRNA:   3'- gCGGGaUUCG-C-GCUA----CGGGGca-GCGG- -5'
32296 3' -60 NC_007024.1 + 45625 0.67 0.434024
Target:  5'- aGUCCgGAG-GCGGUGCUUCGgaagUCGCCc -3'
miRNA:   3'- gCGGGaUUCgCGCUACGGGGC----AGCGG- -5'
32296 3' -60 NC_007024.1 + 37907 0.67 0.452815
Target:  5'- uGCaCCUcucGGGCGCGAUcGCgcucaaCCUGUgGCCg -3'
miRNA:   3'- gCG-GGA---UUCGCGCUA-CG------GGGCAgCGG- -5'
32296 3' -60 NC_007024.1 + 1580 1.11 0.000291
Target:  5'- uCGCCCUAAGCGCGAUGCCCCGUCGCCu -3'
miRNA:   3'- -GCGGGAUUCGCGCUACGGGGCAGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.