miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32297 3' -57.8 NC_007024.1 + 27039 0.66 0.55485
Target:  5'- gGAUCGGUUGGCCaCUGGcgccuuccgguguaUUCACUGCc- -3'
miRNA:   3'- -UUGGUCAACCGG-GACU--------------AGGUGGCGcu -5'
32297 3' -57.8 NC_007024.1 + 9918 0.67 0.505225
Target:  5'- uAGCU-GUUGGCCgUGAUCgaACCGgGAg -3'
miRNA:   3'- -UUGGuCAACCGGgACUAGg-UGGCgCU- -5'
32297 3' -57.8 NC_007024.1 + 30206 0.69 0.354019
Target:  5'- --aCAGUguucUGGCCCUGAcgaggCCAUgGCGAu -3'
miRNA:   3'- uugGUCA----ACCGGGACUa----GGUGgCGCU- -5'
32297 3' -57.8 NC_007024.1 + 2238 1.06 0.000792
Target:  5'- cAACCAGUUGGCCCUGAUCCACCGCGAu -3'
miRNA:   3'- -UUGGUCAACCGGGACUAGGUGGCGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.