miRNA display CGI


Results 1 - 3 of 3 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3230 3' -55.8 NC_001514.1 + 519 1.13 0.000032
Target:  5'- uUCCCUGCACGGCCGUCCCGAUUAACCg -3'
miRNA:   3'- -AGGGACGUGCCGGCAGGGCUAAUUGG- -5'
3230 3' -55.8 NC_001514.1 + 1447 0.67 0.181594
Target:  5'- uUCCCc-CACGGCCccaaacuugCCCGGUgUAGCCc -3'
miRNA:   3'- -AGGGacGUGCCGGca-------GGGCUA-AUUGG- -5'
3230 3' -55.8 NC_001514.1 + 4820 0.66 0.211421
Target:  5'- gUCCCUGCcaaacaguugGCGGCCaGUUaCCGAcccUUAAUa -3'
miRNA:   3'- -AGGGACG----------UGCCGG-CAG-GGCU---AAUUGg -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.