miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32300 3' -50.2 NC_007024.1 + 41851 0.67 0.912226
Target:  5'- aCGUGUCCGUGGUGCuGGcaAGUccGUg -3'
miRNA:   3'- gGUAUAGGUACUACGuCC--UCAucCGg -5'
32300 3' -50.2 NC_007024.1 + 6941 0.69 0.812285
Target:  5'- aCCGgugAUCCAUGGcguggGCAGGccGGUGaaguggcGGCCa -3'
miRNA:   3'- -GGUa--UAGGUACUa----CGUCC--UCAU-------CCGG- -5'
32300 3' -50.2 NC_007024.1 + 30683 0.7 0.751809
Target:  5'- gCAUG-CCAaGAUGUGGGAGUcGGUCc -3'
miRNA:   3'- gGUAUaGGUaCUACGUCCUCAuCCGG- -5'
32300 3' -50.2 NC_007024.1 + 7246 1.15 0.001442
Target:  5'- uCCAUAUCCAUGAUGCAGGAGUAGGCCu -3'
miRNA:   3'- -GGUAUAGGUACUACGUCCUCAUCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.