miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32301 3' -41.9 NC_007024.1 + 15336 0.68 0.999864
Target:  5'- uCUUCAcggaacUGGGACUgGAAuccAGUGGACu-- -3'
miRNA:   3'- -GAAGU------ACCCUGAgUUU---UCAUUUGuuc -5'
32301 3' -41.9 NC_007024.1 + 48121 0.68 0.999683
Target:  5'- gUUCcgGGuuCUCAAGAGUGAugGGa -3'
miRNA:   3'- gAAGuaCCcuGAGUUUUCAUUugUUc -5'
32301 3' -41.9 NC_007024.1 + 30046 0.7 0.998644
Target:  5'- gCUUCGaggGGGACgugUAAGAGgaGGCAGGu -3'
miRNA:   3'- -GAAGUa--CCCUGa--GUUUUCauUUGUUC- -5'
32301 3' -41.9 NC_007024.1 + 8287 1.13 0.016208
Target:  5'- cCUUCAUGGGACUCAAAAGUAAACAAGg -3'
miRNA:   3'- -GAAGUACCCUGAGUUUUCAUUUGUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.