miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32302 5' -52.5 NC_007024.1 + 6929 0.67 0.846611
Target:  5'- uGGCgUGGG-CAGGCCGgUGAaguggCGGc -3'
miRNA:   3'- -CCGgACCUaGUCUGGCaACUgaa--GCC- -5'
32302 5' -52.5 NC_007024.1 + 53553 0.69 0.739998
Target:  5'- uGGCCgGGGUUAGAUCGUUGGauagaCGa -3'
miRNA:   3'- -CCGGaCCUAGUCUGGCAACUgaa--GCc -5'
32302 5' -52.5 NC_007024.1 + 34597 0.71 0.619013
Target:  5'- gGGCCUGGAauucuacUCGGAa-GUUGAgUUCGa -3'
miRNA:   3'- -CCGGACCU-------AGUCUggCAACUgAAGCc -5'
32302 5' -52.5 NC_007024.1 + 8684 1.12 0.001424
Target:  5'- uGGCCUGGAUCAGACCGUUGACUUCGGc -3'
miRNA:   3'- -CCGGACCUAGUCUGGCAACUGAAGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.