miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32304 3' -57.2 NC_007024.1 + 55097 0.66 0.595142
Target:  5'- gUUCUGGccgcgagccgAUGCGCGGACCuGCuCGAaugcgGCCg -3'
miRNA:   3'- -AAGACC----------UGUGCGUCUGGcCG-GCU-----UGG- -5'
32304 3' -57.2 NC_007024.1 + 7666 0.7 0.393572
Target:  5'- aUCUGGGCGCGCAGAgCCacauuguugucGCgGAACUc -3'
miRNA:   3'- aAGACCUGUGCGUCU-GGc----------CGgCUUGG- -5'
32304 3' -57.2 NC_007024.1 + 35294 0.7 0.367238
Target:  5'- cUCUGG-CGaaaucuaugUGCAGGCCaacGGCCGAAUCa -3'
miRNA:   3'- aAGACCuGU---------GCGUCUGG---CCGGCUUGG- -5'
32304 3' -57.2 NC_007024.1 + 9204 1.1 0.000552
Target:  5'- gUUCUGGACACGCAGACCGGCCGAACCg -3'
miRNA:   3'- -AAGACCUGUGCGUCUGGCCGGCUUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.