Results 1 - 2 of 2 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32308 | 3' | -49.1 | NC_007024.1 | + | 54912 | 0.68 | 0.928475 |
Target: 5'- uGCGGUUCUUGcggAUGU-CGUCgauCUUGCc -3' miRNA: 3'- -CGCCAAGAACag-UGCAuGCAG---GAACG- -5' |
|||||||
32308 | 3' | -49.1 | NC_007024.1 | + | 14685 | 1.15 | 0.002175 |
Target: 5'- cGCGGUUCUUGUCACGUACGUCCUUGCc -3' miRNA: 3'- -CGCCAAGAACAGUGCAUGCAGGAACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home