miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32308 5' -54.2 NC_007024.1 + 6225 0.66 0.777774
Target:  5'- uUCGCGCUGAcCGaGGCUCgCcACACGAc -3'
miRNA:   3'- -AGUGUGGCUuGUaCCGGG-GaUGUGCU- -5'
32308 5' -54.2 NC_007024.1 + 26308 0.66 0.757367
Target:  5'- gCGCAguuagcuaCGGGC-UGGCCCCUACGUGGc -3'
miRNA:   3'- aGUGUg-------GCUUGuACCGGGGAUGUGCU- -5'
32308 5' -54.2 NC_007024.1 + 33636 0.68 0.682475
Target:  5'- -aGCAgCCGAugAaGGCCCCUgGCGcCGAc -3'
miRNA:   3'- agUGU-GGCUugUaCCGGGGA-UGU-GCU- -5'
32308 5' -54.2 NC_007024.1 + 32510 0.69 0.605166
Target:  5'- aUCACGgCGAucugACGUGGCCCgaGCAUu- -3'
miRNA:   3'- -AGUGUgGCU----UGUACCGGGgaUGUGcu -5'
32308 5' -54.2 NC_007024.1 + 14650 1.09 0.001238
Target:  5'- gUCACACCGAACAUGGCCCCUACACGAu -3'
miRNA:   3'- -AGUGUGGCUUGUACCGGGGAUGUGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.