miRNA: 3'- guuUAUCGCGUg-GGCGCuGUGGA-GGc -5'
miRNA: 3'- guuuaUCGCG---UGGGcGCuGUGGAGGc -5'
miRNA: 3'- guuUAUCGCGug-GGCGCUGUGGAggc -5'
miRNA: 3'- -GUUUAUCGCGUGGGCGCUGUGGAGGC- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 32311 | 3' | -55.2 | NC_007024.1 | + | 4260 | 0.66 | 0.710063 |
|
Target: 5'- --cGUGGUGCAaaCCGCGuCGCCUaCCa -3' miRNA: 3'- guuUAUCGCGUg-GGCGCuGUGGA-GGc -5' |
|||||||
| 32311 | 3' | -55.2 | NC_007024.1 | + | 1573 | 0.66 | 0.699293 |
|
Target: 5'- ----aAGCGCgauGCCC-CGuCGCCUCCu -3' miRNA: 3'- guuuaUCGCG---UGGGcGCuGUGGAGGc -5' |
|||||||
| 32311 | 3' | -55.2 | NC_007024.1 | + | 20212 | 0.67 | 0.666637 |
|
Target: 5'- --cGUAGUGCuaaCCGCGAUACCUg-- -3' miRNA: 3'- guuUAUCGCGug-GGCGCUGUGGAggc -5' |
|||||||
| 32311 | 3' | -55.2 | NC_007024.1 | + | 17984 | 1.08 | 0.001314 |
|
Target: 5'- gCAAAUAGCGCACCCGCGACACCUCCGc -3' miRNA: 3'- -GUUUAUCGCGUGGGCGCUGUGGAGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home