Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 32313 | 5' | -48.2 | NC_007024.1 | + | 39341 | 0.66 | 0.974843 |
|
Target: 5'- aUCCAuGAUCGAGg-CAUUGGAgcauaccGGCGa -3' miRNA: 3'- -AGGU-CUAGCUUgaGUAACUUa------CCGCa -5' |
|||||||
| 32313 | 5' | -48.2 | NC_007024.1 | + | 42167 | 0.67 | 0.968491 |
|
Target: 5'- aUCCA-AUUGAugUC-UUGGAUGGCa- -3' miRNA: 3'- -AGGUcUAGCUugAGuAACUUACCGca -5' |
|||||||
| 32313 | 5' | -48.2 | NC_007024.1 | + | 4772 | 0.68 | 0.931878 |
|
Target: 5'- gCCGGAgugaucaGGGCUCGUUGuuggGGCGg -3' miRNA: 3'- aGGUCUag-----CUUGAGUAACuua-CCGCa -5' |
|||||||
| 32313 | 5' | -48.2 | NC_007024.1 | + | 42805 | 0.69 | 0.891746 |
|
Target: 5'- aUCCAGGUUGGACguucgCggUGAagGUGGCa- -3' miRNA: 3'- -AGGUCUAGCUUGa----GuaACU--UACCGca -5' |
|||||||
| 32313 | 5' | -48.2 | NC_007024.1 | + | 9909 | 0.71 | 0.822268 |
|
Target: 5'- gCCGuGAUCGAAC-Cgg-GAGUGGCGUc -3' miRNA: 3'- aGGU-CUAGCUUGaGuaaCUUACCGCA- -5' |
|||||||
| 32313 | 5' | -48.2 | NC_007024.1 | + | 37461 | 0.72 | 0.760605 |
|
Target: 5'- uUCUGGAUCGAGCggGUUGAugggcuUGGUGUa -3' miRNA: 3'- -AGGUCUAGCUUGagUAACUu-----ACCGCA- -5' |
|||||||
| 32313 | 5' | -48.2 | NC_007024.1 | + | 22076 | 1.09 | 0.005713 |
|
Target: 5'- aUCCAGAUCGAACUCAUUGAAUGGCGUc -3' miRNA: 3'- -AGGUCUAGCUUGAGUAACUUACCGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home