miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32313 5' -48.2 NC_007024.1 + 39341 0.66 0.974843
Target:  5'- aUCCAuGAUCGAGg-CAUUGGAgcauaccGGCGa -3'
miRNA:   3'- -AGGU-CUAGCUUgaGUAACUUa------CCGCa -5'
32313 5' -48.2 NC_007024.1 + 42167 0.67 0.968491
Target:  5'- aUCCA-AUUGAugUC-UUGGAUGGCa- -3'
miRNA:   3'- -AGGUcUAGCUugAGuAACUUACCGca -5'
32313 5' -48.2 NC_007024.1 + 4772 0.68 0.931878
Target:  5'- gCCGGAgugaucaGGGCUCGUUGuuggGGCGg -3'
miRNA:   3'- aGGUCUag-----CUUGAGUAACuua-CCGCa -5'
32313 5' -48.2 NC_007024.1 + 42805 0.69 0.891746
Target:  5'- aUCCAGGUUGGACguucgCggUGAagGUGGCa- -3'
miRNA:   3'- -AGGUCUAGCUUGa----GuaACU--UACCGca -5'
32313 5' -48.2 NC_007024.1 + 9909 0.71 0.822268
Target:  5'- gCCGuGAUCGAAC-Cgg-GAGUGGCGUc -3'
miRNA:   3'- aGGU-CUAGCUUGaGuaaCUUACCGCA- -5'
32313 5' -48.2 NC_007024.1 + 37461 0.72 0.760605
Target:  5'- uUCUGGAUCGAGCggGUUGAugggcuUGGUGUa -3'
miRNA:   3'- -AGGUCUAGCUUGagUAACUu-----ACCGCA- -5'
32313 5' -48.2 NC_007024.1 + 22076 1.09 0.005713
Target:  5'- aUCCAGAUCGAACUCAUUGAAUGGCGUc -3'
miRNA:   3'- -AGGUCUAGCUUGAGUAACUUACCGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.