miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32314 3' -52.6 NC_007024.1 + 47106 0.66 0.850699
Target:  5'- gCAA-CUGAAgaUGCCAgCgACGCCAa -3'
miRNA:   3'- gGUUgGACUUgaACGGUgGaUGCGGU- -5'
32314 3' -52.6 NC_007024.1 + 8140 0.79 0.206529
Target:  5'- gCCGGCCUGGcgaUUGCCACCguugcCGCCAg -3'
miRNA:   3'- -GGUUGGACUug-AACGGUGGau---GCGGU- -5'
32314 3' -52.6 NC_007024.1 + 8879 0.74 0.400512
Target:  5'- uCCAGCaguucgaagUGAGCgUGCCGCCguugGCGCCGg -3'
miRNA:   3'- -GGUUGg--------ACUUGaACGGUGGa---UGCGGU- -5'
32314 3' -52.6 NC_007024.1 + 7627 0.73 0.479645
Target:  5'- uCCAGCUUGGACUUGUccacggCACCgucgACGuCCAg -3'
miRNA:   3'- -GGUUGGACUUGAACG------GUGGa---UGC-GGU- -5'
32314 3' -52.6 NC_007024.1 + 9631 0.69 0.688648
Target:  5'- aCCGGCC--AGCUccGCCGCCUugGUCu -3'
miRNA:   3'- -GGUUGGacUUGAa-CGGUGGAugCGGu -5'
32314 3' -52.6 NC_007024.1 + 54998 0.68 0.732437
Target:  5'- aCCGACCgGAugacGCUUcaGCCACUcgAUGCCGu -3'
miRNA:   3'- -GGUUGGaCU----UGAA--CGGUGGa-UGCGGU- -5'
32314 3' -52.6 NC_007024.1 + 19986 0.68 0.732437
Target:  5'- aCAACCUGAACUU-CCGa-UACaGCCAa -3'
miRNA:   3'- gGUUGGACUUGAAcGGUggAUG-CGGU- -5'
32314 3' -52.6 NC_007024.1 + 27999 0.67 0.774549
Target:  5'- cUCGGCCUGGACcgGCCAaugCUG-GCCAa -3'
miRNA:   3'- -GGUUGGACUUGaaCGGUg--GAUgCGGU- -5'
32314 3' -52.6 NC_007024.1 + 36241 0.67 0.804568
Target:  5'- gCAGCCUGAACgccugGCUGCuCUGCGagCGa -3'
miRNA:   3'- gGUUGGACUUGaa---CGGUG-GAUGCg-GU- -5'
32314 3' -52.6 NC_007024.1 + 3142 0.66 0.823659
Target:  5'- -aGGCCUGGACgauaacUGCCuuGCCgggcagucgGCGCCGu -3'
miRNA:   3'- ggUUGGACUUGa-----ACGG--UGGa--------UGCGGU- -5'
32314 3' -52.6 NC_007024.1 + 13393 0.66 0.823659
Target:  5'- cCCAGCCaccGCcaccGCCACCgcCGCCAg -3'
miRNA:   3'- -GGUUGGacuUGaa--CGGUGGauGCGGU- -5'
32314 3' -52.6 NC_007024.1 + 22825 1.11 0.001455
Target:  5'- uCCAACCUGAACUUGCCACCUACGCCAu -3'
miRNA:   3'- -GGUUGGACUUGAACGGUGGAUGCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.