miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32314 5' -52.4 NC_007024.1 + 10477 0.66 0.86716
Target:  5'- cGGUGGUAUACGUGAU--UAacuGCCc -3'
miRNA:   3'- -CCGCCGUAUGCACUGgaAUguuCGGc -5'
32314 5' -52.4 NC_007024.1 + 28663 0.67 0.823419
Target:  5'- uGCGaGUAaggGCGUGACCUUggACGAuGCCc -3'
miRNA:   3'- cCGC-CGUa--UGCACUGGAA--UGUU-CGGc -5'
32314 5' -52.4 NC_007024.1 + 17208 0.67 0.814009
Target:  5'- uGCGGUGUAgG-GACUUgaUGCGAGCUGc -3'
miRNA:   3'- cCGCCGUAUgCaCUGGA--AUGUUCGGC- -5'
32314 5' -52.4 NC_007024.1 + 9851 0.7 0.666808
Target:  5'- cGGCGGCcgGCuUGGCCggaGCA-GCCu -3'
miRNA:   3'- -CCGCCGuaUGcACUGGaa-UGUuCGGc -5'
32314 5' -52.4 NC_007024.1 + 12653 0.72 0.533785
Target:  5'- uGGCcuGGC--ACGUGAUCUUGCGcaggacAGCCGg -3'
miRNA:   3'- -CCG--CCGuaUGCACUGGAAUGU------UCGGC- -5'
32314 5' -52.4 NC_007024.1 + 55110 0.72 0.51232
Target:  5'- cGGCGGUcuugGCGUucuGGCC--GCGAGCCGa -3'
miRNA:   3'- -CCGCCGua--UGCA---CUGGaaUGUUCGGC- -5'
32314 5' -52.4 NC_007024.1 + 22785 1.12 0.001249
Target:  5'- uGGCGGCAUACGUGACCUUACAAGCCGg -3'
miRNA:   3'- -CCGCCGUAUGCACUGGAAUGUUCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.