miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32317 5' -52.2 NC_007024.1 + 5465 0.66 0.859247
Target:  5'- -aAUUC-CACCugCGCUaACcACCUCc -3'
miRNA:   3'- ggUAAGaGUGGugGCGGaUGuUGGAG- -5'
32317 5' -52.2 NC_007024.1 + 27705 0.67 0.823659
Target:  5'- cCCGgcUC-CACUAUguUGUCUACGACCUCa -3'
miRNA:   3'- -GGUa-AGaGUGGUG--GCGGAUGUUGGAG- -5'
32317 5' -52.2 NC_007024.1 + 41222 0.68 0.764221
Target:  5'- aCCAgugCUCACCAa-GUCUGCugugaucuACCUCa -3'
miRNA:   3'- -GGUaa-GAGUGGUggCGGAUGu-------UGGAG- -5'
32317 5' -52.2 NC_007024.1 + 55159 0.69 0.710703
Target:  5'- uCC-UUCUUcuugcgacgauuGCCACCGCCggccugaGCGACUUCa -3'
miRNA:   3'- -GGuAAGAG------------UGGUGGCGGa------UGUUGGAG- -5'
32317 5' -52.2 NC_007024.1 + 13383 0.7 0.677529
Target:  5'- gCCAccgC-CACCGCCGCCaGCAGCUcCa -3'
miRNA:   3'- -GGUaa-GaGUGGUGGCGGaUGUUGGaG- -5'
32317 5' -52.2 NC_007024.1 + 15379 0.72 0.521977
Target:  5'- cUCAUUgUCACCGCCGCgCUugAACg-- -3'
miRNA:   3'- -GGUAAgAGUGGUGGCG-GAugUUGgag -5'
32317 5' -52.2 NC_007024.1 + 8159 0.75 0.36419
Target:  5'- aCAacUUCUCACCACCGUUgcCGGCCUg -3'
miRNA:   3'- gGU--AAGAGUGGUGGCGGauGUUGGAg -5'
32317 5' -52.2 NC_007024.1 + 26611 1.13 0.001072
Target:  5'- aCCAUUCUCACCACCGCCUACAACCUCg -3'
miRNA:   3'- -GGUAAGAGUGGUGGCGGAUGUUGGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.