Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
32317 | 5' | -52.2 | NC_007024.1 | + | 5465 | 0.66 | 0.859247 |
Target: 5'- -aAUUC-CACCugCGCUaACcACCUCc -3' miRNA: 3'- ggUAAGaGUGGugGCGGaUGuUGGAG- -5' |
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32317 | 5' | -52.2 | NC_007024.1 | + | 27705 | 0.67 | 0.823659 |
Target: 5'- cCCGgcUC-CACUAUguUGUCUACGACCUCa -3' miRNA: 3'- -GGUa-AGaGUGGUG--GCGGAUGUUGGAG- -5' |
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32317 | 5' | -52.2 | NC_007024.1 | + | 41222 | 0.68 | 0.764221 |
Target: 5'- aCCAgugCUCACCAa-GUCUGCugugaucuACCUCa -3' miRNA: 3'- -GGUaa-GAGUGGUggCGGAUGu-------UGGAG- -5' |
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32317 | 5' | -52.2 | NC_007024.1 | + | 55159 | 0.69 | 0.710703 |
Target: 5'- uCC-UUCUUcuugcgacgauuGCCACCGCCggccugaGCGACUUCa -3' miRNA: 3'- -GGuAAGAG------------UGGUGGCGGa------UGUUGGAG- -5' |
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32317 | 5' | -52.2 | NC_007024.1 | + | 13383 | 0.7 | 0.677529 |
Target: 5'- gCCAccgC-CACCGCCGCCaGCAGCUcCa -3' miRNA: 3'- -GGUaa-GaGUGGUGGCGGaUGUUGGaG- -5' |
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32317 | 5' | -52.2 | NC_007024.1 | + | 15379 | 0.72 | 0.521977 |
Target: 5'- cUCAUUgUCACCGCCGCgCUugAACg-- -3' miRNA: 3'- -GGUAAgAGUGGUGGCG-GAugUUGgag -5' |
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32317 | 5' | -52.2 | NC_007024.1 | + | 8159 | 0.75 | 0.36419 |
Target: 5'- aCAacUUCUCACCACCGUUgcCGGCCUg -3' miRNA: 3'- gGU--AAGAGUGGUGGCGGauGUUGGAg -5' |
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32317 | 5' | -52.2 | NC_007024.1 | + | 26611 | 1.13 | 0.001072 |
Target: 5'- aCCAUUCUCACCACCGCCUACAACCUCg -3' miRNA: 3'- -GGUAAGAGUGGUGGCGGAUGUUGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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