miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32320 3' -56.4 NC_007024.1 + 33503 1.1 0.000453
Target:  5'- aUUAGCCUGGGCCAUAACAGCAGCGCCa -3'
miRNA:   3'- -AAUCGGACCCGGUAUUGUCGUCGCGG- -5'
32320 3' -56.4 NC_007024.1 + 3142 0.73 0.240862
Target:  5'- -aGGCCUGGacgauaacugccuuGCCG-GGCAGuCGGCGCCg -3'
miRNA:   3'- aaUCGGACC--------------CGGUaUUGUC-GUCGCGG- -5'
32320 3' -56.4 NC_007024.1 + 9793 0.69 0.428701
Target:  5'- cUUGGUCgGGGUCgcgGUGGCcGUGGCGCCg -3'
miRNA:   3'- -AAUCGGaCCCGG---UAUUGuCGUCGCGG- -5'
32320 3' -56.4 NC_007024.1 + 13656 0.68 0.438496
Target:  5'- uUUGGCC-GcGGCCu---CAGUAGUGCCc -3'
miRNA:   3'- -AAUCGGaC-CCGGuauuGUCGUCGCGG- -5'
32320 3' -56.4 NC_007024.1 + 13331 0.67 0.508243
Target:  5'- aUGGUCUGaaaugcGGCauugauucgguUGAUAGCGGCGCCg -3'
miRNA:   3'- aAUCGGAC------CCGgu---------AUUGUCGUCGCGG- -5'
32320 3' -56.4 NC_007024.1 + 21648 0.67 0.531817
Target:  5'- gUAGCCaGGaucuGCCAUAGUAGUgccuuaucgGGCGCCg -3'
miRNA:   3'- aAUCGGaCC----CGGUAUUGUCG---------UCGCGG- -5'
32320 3' -56.4 NC_007024.1 + 15982 0.66 0.564567
Target:  5'- --cGCU--GGUUAcAGCAGCGGCGCCu -3'
miRNA:   3'- aauCGGacCCGGUaUUGUCGUCGCGG- -5'
32320 3' -56.4 NC_007024.1 + 9919 0.66 0.60898
Target:  5'- gUAGCUguuGGCCGUGAUcgaaccgggAGUGGCGUCu -3'
miRNA:   3'- aAUCGGac-CCGGUAUUG---------UCGUCGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.