miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32321 5' -55.3 NC_007024.1 + 8621 0.67 0.612309
Target:  5'- uGGUgaaggUGGCCggauucuugGCGgugaugguaCCACCGACGGCGAg -3'
miRNA:   3'- -CCAa----GCCGG---------UGUa--------GGUGGUUGCCGUU- -5'
32321 5' -55.3 NC_007024.1 + 9701 0.69 0.535749
Target:  5'- cGGUgcCGGUCACAgaggggucgCCggcagcuuuGCCAGCGGCAAc -3'
miRNA:   3'- -CCAa-GCCGGUGUa--------GG---------UGGUUGCCGUU- -5'
32321 5' -55.3 NC_007024.1 + 33985 1.09 0.000953
Target:  5'- cGGUUCGGCCACAUCCACCAACGGCAAg -3'
miRNA:   3'- -CCAAGCCGGUGUAGGUGGUUGCCGUU- -5'
32321 5' -55.3 NC_007024.1 + 40219 0.68 0.590214
Target:  5'- ---cUGGCgGC-UCCGCCAAgGGCGAu -3'
miRNA:   3'- ccaaGCCGgUGuAGGUGGUUgCCGUU- -5'
32321 5' -55.3 NC_007024.1 + 46444 0.69 0.493478
Target:  5'- aGGUUCGG--GCGUCgGCCAACGGa-- -3'
miRNA:   3'- -CCAAGCCggUGUAGgUGGUUGCCguu -5'
32321 5' -55.3 NC_007024.1 + 51991 0.66 0.711421
Target:  5'- uGGagUCGGCCagGCA-CgACCAcaugGCGGCAAc -3'
miRNA:   3'- -CCa-AGCCGG--UGUaGgUGGU----UGCCGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.