miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32324 3' -40.8 NC_007024.1 + 756 0.66 0.999998
Target:  5'- --aAGUc-AUCGAAgcgcugaAUGCUCAGAGCg -3'
miRNA:   3'- ucaUCAauUAGUUUg------UAUGAGUCUCG- -5'
32324 3' -40.8 NC_007024.1 + 6372 0.68 0.99994
Target:  5'- aGGUGGcUGAUCAAGCAccaUGCcagaaAGGGCc -3'
miRNA:   3'- -UCAUCaAUUAGUUUGU---AUGag---UCUCG- -5'
32324 3' -40.8 NC_007024.1 + 26281 0.83 0.741036
Target:  5'- cGUGGcUUAAUCuGAGCGcACUCAGAGCg -3'
miRNA:   3'- uCAUC-AAUUAG-UUUGUaUGAGUCUCG- -5'
32324 3' -40.8 NC_007024.1 + 37413 1.17 0.012843
Target:  5'- aAGUAGUUAAUCAAACAUACUCAGAGCg -3'
miRNA:   3'- -UCAUCAAUUAGUUUGUAUGAGUCUCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.