miRNA: 3'- gcuCGC-CGuCUGGCACCa-------UGaGCCCC- -5'
miRNA: 3'- -GC-UCGCCGuCUGGCAC--CAUgAG-CCCC- -5'
miRNA: 3'- gCUCGCCGUCugGCACcauGA-GCC-CC- -5'
miRNA: 3'- -GCUCGcCG--UCUGGCACCAUGa-------GCCCc -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 32332 | 5' | -58.9 | NC_007024.1 | + | 53575 | 0.66 | 0.587703 |
|
Target: 5'- --uGCGcGCuGACCGUGGcgguauugGC-CGGGGu -3' miRNA: 3'- gcuCGC-CGuCUGGCACCa-------UGaGCCCC- -5' |
|||||||
| 32332 | 5' | -58.9 | NC_007024.1 | + | 51048 | 0.66 | 0.546011 |
|
Target: 5'- uCGaAGCGGCcGAUCGUGcuGUGgUCuGGGGc -3' miRNA: 3'- -GC-UCGCCGuCUGGCAC--CAUgAG-CCCC- -5' |
|||||||
| 32332 | 5' | -58.9 | NC_007024.1 | + | 48212 | 0.67 | 0.505311 |
|
Target: 5'- aGAGCGGCAGuuCGUGcu-CUcCGGuGGa -3' miRNA: 3'- gCUCGCCGUCugGCACcauGA-GCC-CC- -5' |
|||||||
| 32332 | 5' | -58.9 | NC_007024.1 | + | 45991 | 0.67 | 0.475661 |
|
Target: 5'- cCGAGCaGUuuGGGCCGUGGUGCagaaagaaUGGGa -3' miRNA: 3'- -GCUCGcCG--UCUGGCACCAUGa-------GCCCc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home