miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32334 3' -59.2 NC_007024.1 + 35645 0.72 0.214223
Target:  5'- -aCUUCUACAGAuCGCGUCUGGuGCUGUg -3'
miRNA:   3'- uaGAAGGUGUCU-GCGCGGGCC-UGGCA- -5'
32334 3' -59.2 NC_007024.1 + 9545 0.72 0.222109
Target:  5'- cGUCUUCCAgGGugGCGCCguaguaacgggucaGGAUCGg -3'
miRNA:   3'- -UAGAAGGUgUCugCGCGGg-------------CCUGGCa -5'
32334 3' -59.2 NC_007024.1 + 53407 0.68 0.368132
Target:  5'- uUCUaCCACAGGuagGCGCUCGGugCGc -3'
miRNA:   3'- uAGAaGGUGUCUg--CGCGGGCCugGCa -5'
32334 3' -59.2 NC_007024.1 + 5406 0.68 0.37583
Target:  5'- aGUCgcCCAUaccuuuaAGACGUGCCCGGuaguCCGg -3'
miRNA:   3'- -UAGaaGGUG-------UCUGCGCGGGCCu---GGCa -5'
32334 3' -59.2 NC_007024.1 + 18486 0.67 0.412244
Target:  5'- -gCUUuuGcCAGACGUGCCCuGGCCGc -3'
miRNA:   3'- uaGAAggU-GUCUGCGCGGGcCUGGCa -5'
32334 3' -59.2 NC_007024.1 + 5835 0.66 0.489158
Target:  5'- cAUCUgCCACAGuACGaUGUCCGGGCUc- -3'
miRNA:   3'- -UAGAaGGUGUC-UGC-GCGGGCCUGGca -5'
32334 3' -59.2 NC_007024.1 + 54890 0.66 0.509435
Target:  5'- gAUCUUgCCgACGGugGUGCCCaGGGCa-- -3'
miRNA:   3'- -UAGAA-GG-UGUCugCGCGGG-CCUGgca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.