Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32334 | 3' | -59.2 | NC_007024.1 | + | 5406 | 0.68 | 0.37583 |
Target: 5'- aGUCgcCCAUaccuuuaAGACGUGCCCGGuaguCCGg -3' miRNA: 3'- -UAGaaGGUG-------UCUGCGCGGGCCu---GGCa -5' |
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32334 | 3' | -59.2 | NC_007024.1 | + | 5835 | 0.66 | 0.489158 |
Target: 5'- cAUCUgCCACAGuACGaUGUCCGGGCUc- -3' miRNA: 3'- -UAGAaGGUGUC-UGC-GCGGGCCUGGca -5' |
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32334 | 3' | -59.2 | NC_007024.1 | + | 9545 | 0.72 | 0.222109 |
Target: 5'- cGUCUUCCAgGGugGCGCCguaguaacgggucaGGAUCGg -3' miRNA: 3'- -UAGAAGGUgUCugCGCGGg-------------CCUGGCa -5' |
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32334 | 3' | -59.2 | NC_007024.1 | + | 18486 | 0.67 | 0.412244 |
Target: 5'- -gCUUuuGcCAGACGUGCCCuGGCCGc -3' miRNA: 3'- uaGAAggU-GUCUGCGCGGGcCUGGCa -5' |
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32334 | 3' | -59.2 | NC_007024.1 | + | 35645 | 0.72 | 0.214223 |
Target: 5'- -aCUUCUACAGAuCGCGUCUGGuGCUGUg -3' miRNA: 3'- uaGAAGGUGUCU-GCGCGGGCC-UGGCA- -5' |
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32334 | 3' | -59.2 | NC_007024.1 | + | 53407 | 0.68 | 0.368132 |
Target: 5'- uUCUaCCACAGGuagGCGCUCGGugCGc -3' miRNA: 3'- uAGAaGGUGUCUg--CGCGGGCCugGCa -5' |
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32334 | 3' | -59.2 | NC_007024.1 | + | 54890 | 0.66 | 0.509435 |
Target: 5'- gAUCUUgCCgACGGugGUGCCCaGGGCa-- -3' miRNA: 3'- -UAGAA-GG-UGUCugCGCGGG-CCUGgca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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