miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32334 5' -60.6 NC_007024.1 + 26513 0.66 0.442145
Target:  5'- -cAUGGUgGCUGAacCUGCUCGGgAGGGUa -3'
miRNA:   3'- cuUGCCG-CGGCU--GACGGGCCgUUCCG- -5'
32334 5' -60.6 NC_007024.1 + 32508 0.66 0.414407
Target:  5'- -cACGGCGauCUGACgugGCCCGaGCAuuuguucugGGGUg -3'
miRNA:   3'- cuUGCCGC--GGCUGa--CGGGC-CGU---------UCCG- -5'
32334 5' -60.6 NC_007024.1 + 33618 0.67 0.39652
Target:  5'- --cUGGCGCCGACgcacUGCUgGaacaCAAGGCa -3'
miRNA:   3'- cuuGCCGCGGCUG----ACGGgCc---GUUCCG- -5'
32334 5' -60.6 NC_007024.1 + 47730 0.67 0.354041
Target:  5'- cAACGGUGUCGGCgGCCauGuCGAGGUc -3'
miRNA:   3'- cUUGCCGCGGCUGaCGGgcC-GUUCCG- -5'
32334 5' -60.6 NC_007024.1 + 9854 0.69 0.292995
Target:  5'- cAGCGGCgGCCGGCUugGCCgGaGCAgccuGGGUg -3'
miRNA:   3'- cUUGCCG-CGGCUGA--CGGgC-CGU----UCCG- -5'
32334 5' -60.6 NC_007024.1 + 41559 0.69 0.292995
Target:  5'- --cUGGCGUCGuuCUGgCCGGCAAcacuGGCu -3'
miRNA:   3'- cuuGCCGCGGCu-GACgGGCCGUU----CCG- -5'
32334 5' -60.6 NC_007024.1 + 54772 0.7 0.234503
Target:  5'- uGGGCGGCGCCuuCUcGgCCGGCGuGGUc -3'
miRNA:   3'- -CUUGCCGCGGcuGA-CgGGCCGUuCCG- -5'
32334 5' -60.6 NC_007024.1 + 13268 0.7 0.228068
Target:  5'- aAGCGGCGCuCGAUUGCagaaaugccagcaUCGGCAGuucGGCu -3'
miRNA:   3'- cUUGCCGCG-GCUGACG-------------GGCCGUU---CCG- -5'
32334 5' -60.6 NC_007024.1 + 33823 0.71 0.217306
Target:  5'- cAACGGCGuCCGGCUGCCuCGGUc---- -3'
miRNA:   3'- cUUGCCGC-GGCUGACGG-GCCGuuccg -5'
32334 5' -60.6 NC_007024.1 + 7449 0.71 0.204861
Target:  5'- --cCGGCGCCGgcgggucuggaauaACUcccauacucucGCCCGGCGGGGg -3'
miRNA:   3'- cuuGCCGCGGC--------------UGA-----------CGGGCCGUUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.