miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32341 5' -54.7 NC_007024.1 + 109 0.66 0.752209
Target:  5'- cGCCUCGauGCCAUaguuagcgGCCGGGGA-GGCc -3'
miRNA:   3'- -UGGAGUgcCGGUAg-------UGGUUCUUgCCG- -5'
32341 5' -54.7 NC_007024.1 + 23138 0.66 0.741768
Target:  5'- aGCCagGCGuuggaguuGCCAUgGCCAgAGAAcCGGCa -3'
miRNA:   3'- -UGGagUGC--------CGGUAgUGGU-UCUU-GCCG- -5'
32341 5' -54.7 NC_007024.1 + 27996 0.66 0.731215
Target:  5'- gGCCUgGacCGGCCAaugcUgGCCAAGcaaauCGGCa -3'
miRNA:   3'- -UGGAgU--GCCGGU----AgUGGUUCuu---GCCG- -5'
32341 5' -54.7 NC_007024.1 + 24061 0.66 0.730154
Target:  5'- cACCUCgucgacguagcGCGGCCAuaaaUCGgCAGGucucacggaucgcAGCGGCu -3'
miRNA:   3'- -UGGAG-----------UGCCGGU----AGUgGUUC-------------UUGCCG- -5'
32341 5' -54.7 NC_007024.1 + 33511 0.67 0.699004
Target:  5'- cCCUCGCgauuagccugGGCCAUaacagcagCGCCAuccugauacAGGAUGGCg -3'
miRNA:   3'- uGGAGUG----------CCGGUA--------GUGGU---------UCUUGCCG- -5'
32341 5' -54.7 NC_007024.1 + 7013 0.67 0.677183
Target:  5'- gACCuUCGCGGCCAcuucaggaaUCACCcAGGcuuUGGUc -3'
miRNA:   3'- -UGG-AGUGCCGGU---------AGUGGuUCUu--GCCG- -5'
32341 5' -54.7 NC_007024.1 + 8137 0.67 0.670599
Target:  5'- gGCCUgGCGauugccaccguugccGCCAgaGCCAGuGGACGGCu -3'
miRNA:   3'- -UGGAgUGC---------------CGGUagUGGUU-CUUGCCG- -5'
32341 5' -54.7 NC_007024.1 + 31626 0.68 0.643052
Target:  5'- gGCCUCAC-GCCGg-ACCAAGucaaucaagucauGAUGGCg -3'
miRNA:   3'- -UGGAGUGcCGGUagUGGUUC-------------UUGCCG- -5'
32341 5' -54.7 NC_007024.1 + 6487 0.68 0.600009
Target:  5'- cGCCaaCGCGGCC--CAUCAAGAggguuucuucgACGGCg -3'
miRNA:   3'- -UGGa-GUGCCGGuaGUGGUUCU-----------UGCCG- -5'
32341 5' -54.7 NC_007024.1 + 40221 0.68 0.600009
Target:  5'- cCCUgGCGGCUc-CGCCAAGGGCGa- -3'
miRNA:   3'- uGGAgUGCCGGuaGUGGUUCUUGCcg -5'
32341 5' -54.7 NC_007024.1 + 49152 0.69 0.589018
Target:  5'- gGCCUaucugCAagaGGCCAU--CCAAGAugGGCc -3'
miRNA:   3'- -UGGA-----GUg--CCGGUAguGGUUCUugCCG- -5'
32341 5' -54.7 NC_007024.1 + 8956 0.7 0.534775
Target:  5'- -aCUUGCGGCgCAUCGCgAAGGACGa- -3'
miRNA:   3'- ugGAGUGCCG-GUAGUGgUUCUUGCcg -5'
32341 5' -54.7 NC_007024.1 + 8006 0.7 0.492684
Target:  5'- uGCCUUcCGGauCCuUCGCCAcAGGGCGGCc -3'
miRNA:   3'- -UGGAGuGCC--GGuAGUGGU-UCUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.