miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32348 3' -49.9 NC_007024.1 + 26166 0.66 0.944375
Target:  5'- aGCAGAaauuaugggacuucaGUGAgGGGCgUgGUACGucGCCu -3'
miRNA:   3'- -CGUUU---------------UAUU-CCCGgAgCAUGCucCGG- -5'
32348 3' -49.9 NC_007024.1 + 50219 0.66 0.942363
Target:  5'- aGCGAAGU---GGCCUCGggUGAGGa- -3'
miRNA:   3'- -CGUUUUAuucCCGGAGCauGCUCCgg -5'
32348 3' -49.9 NC_007024.1 + 269 0.68 0.884686
Target:  5'- aGCAGcAUAAuGGaCUUCGUACGucGCCu -3'
miRNA:   3'- -CGUUuUAUUcCC-GGAGCAUGCucCGG- -5'
32348 3' -49.9 NC_007024.1 + 48618 0.68 0.884686
Target:  5'- gGCAAGA--AGGGCauCUgGUACGuGGGCg -3'
miRNA:   3'- -CGUUUUauUCCCG--GAgCAUGC-UCCGg -5'
32348 3' -49.9 NC_007024.1 + 44658 0.7 0.805075
Target:  5'- gGCA----AAGGGCUUCGggcUugGGGGCa -3'
miRNA:   3'- -CGUuuuaUUCCCGGAGC---AugCUCCGg -5'
32348 3' -49.9 NC_007024.1 + 29511 0.7 0.774675
Target:  5'- uGCAAAAUcucGGcGCuCUCGga-GAGGCCg -3'
miRNA:   3'- -CGUUUUAuu-CC-CG-GAGCaugCUCCGG- -5'
32348 3' -49.9 NC_007024.1 + 2302 0.77 0.425211
Target:  5'- cGCAAGAguuGGGCCUgCGUAUu-GGCCg -3'
miRNA:   3'- -CGUUUUauuCCCGGA-GCAUGcuCCGG- -5'
32348 3' -49.9 NC_007024.1 + 46129 0.81 0.244498
Target:  5'- cGCGcu-UGAGGGCCaCGUGCGAGGUg -3'
miRNA:   3'- -CGUuuuAUUCCCGGaGCAUGCUCCGg -5'
32348 3' -49.9 NC_007024.1 + 26396 1.01 0.013432
Target:  5'- uGUAAucUAAGGGCCUCGUACGAGGCCc -3'
miRNA:   3'- -CGUUuuAUUCCCGGAGCAUGCUCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.