Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32348 | 3' | -49.9 | NC_007024.1 | + | 26166 | 0.66 | 0.944375 |
Target: 5'- aGCAGAaauuaugggacuucaGUGAgGGGCgUgGUACGucGCCu -3' miRNA: 3'- -CGUUU---------------UAUU-CCCGgAgCAUGCucCGG- -5' |
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32348 | 3' | -49.9 | NC_007024.1 | + | 50219 | 0.66 | 0.942363 |
Target: 5'- aGCGAAGU---GGCCUCGggUGAGGa- -3' miRNA: 3'- -CGUUUUAuucCCGGAGCauGCUCCgg -5' |
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32348 | 3' | -49.9 | NC_007024.1 | + | 269 | 0.68 | 0.884686 |
Target: 5'- aGCAGcAUAAuGGaCUUCGUACGucGCCu -3' miRNA: 3'- -CGUUuUAUUcCC-GGAGCAUGCucCGG- -5' |
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32348 | 3' | -49.9 | NC_007024.1 | + | 48618 | 0.68 | 0.884686 |
Target: 5'- gGCAAGA--AGGGCauCUgGUACGuGGGCg -3' miRNA: 3'- -CGUUUUauUCCCG--GAgCAUGC-UCCGg -5' |
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32348 | 3' | -49.9 | NC_007024.1 | + | 44658 | 0.7 | 0.805075 |
Target: 5'- gGCA----AAGGGCUUCGggcUugGGGGCa -3' miRNA: 3'- -CGUuuuaUUCCCGGAGC---AugCUCCGg -5' |
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32348 | 3' | -49.9 | NC_007024.1 | + | 29511 | 0.7 | 0.774675 |
Target: 5'- uGCAAAAUcucGGcGCuCUCGga-GAGGCCg -3' miRNA: 3'- -CGUUUUAuu-CC-CG-GAGCaugCUCCGG- -5' |
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32348 | 3' | -49.9 | NC_007024.1 | + | 2302 | 0.77 | 0.425211 |
Target: 5'- cGCAAGAguuGGGCCUgCGUAUu-GGCCg -3' miRNA: 3'- -CGUUUUauuCCCGGA-GCAUGcuCCGG- -5' |
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32348 | 3' | -49.9 | NC_007024.1 | + | 46129 | 0.81 | 0.244498 |
Target: 5'- cGCGcu-UGAGGGCCaCGUGCGAGGUg -3' miRNA: 3'- -CGUuuuAUUCCCGGaGCAUGCUCCGg -5' |
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32348 | 3' | -49.9 | NC_007024.1 | + | 26396 | 1.01 | 0.013432 |
Target: 5'- uGUAAucUAAGGGCCUCGUACGAGGCCc -3' miRNA: 3'- -CGUUuuAUUCCCGGAGCAUGCUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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