miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32349 3' -52.8 NC_007024.1 + 24805 0.66 0.796632
Target:  5'- cGUCGGUGCCUCAGCggcuacuUGGAucGCGGu -3'
miRNA:   3'- -UAGCUAUGGGGUUGac-----ACCUu-CGCUg -5'
32349 3' -52.8 NC_007024.1 + 29741 0.66 0.796632
Target:  5'- cUCGAugccUACCCCAAUaGUGGucGgGAUc -3'
miRNA:   3'- uAGCU----AUGGGGUUGaCACCuuCgCUG- -5'
32349 3' -52.8 NC_007024.1 + 2203 0.67 0.776346
Target:  5'- cUCGuucCCCCAGCaGUcccGGAGGCGAg -3'
miRNA:   3'- uAGCuauGGGGUUGaCA---CCUUCGCUg -5'
32349 3' -52.8 NC_007024.1 + 14859 0.69 0.633516
Target:  5'- -gUGGUacgGCCUUAGCaGUGGAAGUGGCg -3'
miRNA:   3'- uaGCUA---UGGGGUUGaCACCUUCGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.