miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32355 3' -53 NC_007024.1 + 15947 0.66 0.815978
Target:  5'- cUUGGACCCau-GAACG-CGCCCAu- -3'
miRNA:   3'- uAACUUGGGgucUUUGCuGCGGGUcu -5'
32355 3' -53 NC_007024.1 + 23256 0.66 0.796498
Target:  5'- -gUGGACCgCAGGAACGGuucaggauguUGgCCAGAc -3'
miRNA:   3'- uaACUUGGgGUCUUUGCU----------GCgGGUCU- -5'
32355 3' -53 NC_007024.1 + 22217 0.66 0.786481
Target:  5'- cUUGAugCUCGGc-AUGGCGCCCAa- -3'
miRNA:   3'- uAACUugGGGUCuuUGCUGCGGGUcu -5'
32355 3' -53 NC_007024.1 + 29961 0.73 0.400915
Target:  5'- --gGAcCCCCAGGAACGuuGCCCAu- -3'
miRNA:   3'- uaaCUuGGGGUCUUUGCugCGGGUcu -5'
32355 3' -53 NC_007024.1 + 43383 0.76 0.281486
Target:  5'- aGUUGGACUCCGucgcccggccaggcGAuauCGACGCCCAGAa -3'
miRNA:   3'- -UAACUUGGGGU--------------CUuu-GCUGCGGGUCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.