Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32362 | 5' | -57 | NC_007024.1 | + | 8139 | 0.68 | 0.511987 |
Target: 5'- cCGGCCuGgcgauugCCACCGuuGCCGCCAGa- -3' miRNA: 3'- -GUCGGuCa------GGUGGUggUGGUGGUUcc -5' |
|||||||
32362 | 5' | -57 | NC_007024.1 | + | 8844 | 0.66 | 0.640552 |
Target: 5'- cCGGCCgagauGGUCUGCgACgcaGCCACCAGGc -3' miRNA: 3'- -GUCGG-----UCAGGUGgUGg--UGGUGGUUCc -5' |
|||||||
32362 | 5' | -57 | NC_007024.1 | + | 9630 | 0.73 | 0.262285 |
Target: 5'- cCGGCCAGcUCCGCCGCCuuggucugcGCaGCCAGGa -3' miRNA: 3'- -GUCGGUC-AGGUGGUGG---------UGgUGGUUCc -5' |
|||||||
32362 | 5' | -57 | NC_007024.1 | + | 11689 | 0.68 | 0.491451 |
Target: 5'- -cGCCAG-CCACagaugcgccaACCugCACCAAGu -3' miRNA: 3'- guCGGUCaGGUGg---------UGGugGUGGUUCc -5' |
|||||||
32362 | 5' | -57 | NC_007024.1 | + | 13369 | 0.66 | 0.607918 |
Target: 5'- -nGCCAGcagcUCCACCcauACCGCCAgCCAu-- -3' miRNA: 3'- guCGGUC----AGGUGG---UGGUGGU-GGUucc -5' |
|||||||
32362 | 5' | -57 | NC_007024.1 | + | 13392 | 0.81 | 0.070884 |
Target: 5'- cCAGCCAccgCCACCGCCACCGCCGc-- -3' miRNA: 3'- -GUCGGUca-GGUGGUGGUGGUGGUucc -5' |
|||||||
32362 | 5' | -57 | NC_007024.1 | + | 14212 | 0.67 | 0.56473 |
Target: 5'- aGGCCA-UCCauugcACCGCUGCUACCAAcGGu -3' miRNA: 3'- gUCGGUcAGG-----UGGUGGUGGUGGUU-CC- -5' |
|||||||
32362 | 5' | -57 | NC_007024.1 | + | 20941 | 0.66 | 0.607918 |
Target: 5'- gAGCCAcgCCACCACUAgCAUCAAu- -3' miRNA: 3'- gUCGGUcaGGUGGUGGUgGUGGUUcc -5' |
|||||||
32362 | 5' | -57 | NC_007024.1 | + | 30304 | 0.66 | 0.629669 |
Target: 5'- gCGGCCAGcucucacaUCUACgAgCGCCACUAcAGGa -3' miRNA: 3'- -GUCGGUC--------AGGUGgUgGUGGUGGU-UCC- -5' |
|||||||
32362 | 5' | -57 | NC_007024.1 | + | 48096 | 0.68 | 0.471306 |
Target: 5'- aCAGCCAGUCCGCgGgcUCACUAUaCGAGu -3' miRNA: 3'- -GUCGGUCAGGUGgU--GGUGGUG-GUUCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home