miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32384 3' -53.2 NC_007041.1 + 5641 1.06 0.000285
Target:  5'- cCUUAGCUUAGGUCCAGUCGUGGGCAAc -3'
miRNA:   3'- -GAAUCGAAUCCAGGUCAGCACCCGUU- -5'
32384 3' -53.2 NC_007041.1 + 5589 1.06 0.000285
Target:  5'- cCUUAGCUUAGGUCCAGUCGUGGGCAAc -3'
miRNA:   3'- -GAAUCGAAUCCAGGUCAGCACCCGUU- -5'
32384 3' -53.2 NC_007041.1 + 5485 1.06 0.000285
Target:  5'- cCUUAGCUUAGGUCCAGUCGUGGGCAAc -3'
miRNA:   3'- -GAAUCGAAUCCAGGUCAGCACCCGUU- -5'
32384 3' -53.2 NC_007041.1 + 5381 1.06 0.000285
Target:  5'- cCUUAGCUUAGGUCCAGUCGUGGGCAAc -3'
miRNA:   3'- -GAAUCGAAUCCAGGUCAGCACCCGUU- -5'
32384 3' -53.2 NC_007041.1 + 5535 1.02 0.00065
Target:  5'- -cUAGCUUAGGUCCAGUCGUGGGCAAc -3'
miRNA:   3'- gaAUCGAAUCCAGGUCAGCACCCGUU- -5'
32384 3' -53.2 NC_007041.1 + 5431 1.02 0.00065
Target:  5'- -cUAGCUUAGGUCCAGUCGUGGGCAAc -3'
miRNA:   3'- gaAUCGAAUCCAGGUCAGCACCCGUU- -5'
32384 3' -53.2 NC_007041.1 + 5327 0.86 0.010504
Target:  5'- -cUAGCUaAGGcCCAGUCGUGGGCAAc -3'
miRNA:   3'- gaAUCGAaUCCaGGUCAGCACCCGUU- -5'
32384 3' -53.2 NC_007041.1 + 5691 0.66 0.352403
Target:  5'- -cUAGCUaAGGcCCAGgacUGGGCAAc -3'
miRNA:   3'- gaAUCGAaUCCaGGUCagcACCCGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.