miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32385 3' -57.5 NC_007041.1 + 5007 0.69 0.124667
Target:  5'- cCAGGcUUGGGcCAAgacugaauacCCUAGCUUUGGCc -3'
miRNA:   3'- -GUCCuGACCC-GUU----------GGAUCGAGACCGa -5'
32385 3' -57.5 NC_007041.1 + 5321 0.71 0.085359
Target:  5'- aAGGcCcagucgUGGGCAACCUAGCg-UGGCUu -3'
miRNA:   3'- gUCCuG------ACCCGUUGGAUCGagACCGA- -5'
32385 3' -57.5 NC_007041.1 + 4412 0.72 0.070434
Target:  5'- uCAGGGCU-GGCAACCaGGCU-UGGCa -3'
miRNA:   3'- -GUCCUGAcCCGUUGGaUCGAgACCGa -5'
32385 3' -57.5 NC_007041.1 + 5374 0.86 0.004726
Target:  5'- uUAGGuccaguCgUGGGCAACCUAGCUCUGGCUu -3'
miRNA:   3'- -GUCCu-----G-ACCCGUUGGAUCGAGACCGA- -5'
32385 3' -57.5 NC_007041.1 + 5426 0.86 0.004726
Target:  5'- uUAGGuccaguCgUGGGCAACCUAGCUCUGGCUu -3'
miRNA:   3'- -GUCCu-----G-ACCCGUUGGAUCGAGACCGA- -5'
32385 3' -57.5 NC_007041.1 + 5478 0.86 0.004726
Target:  5'- uUAGGuccaguCgUGGGCAACCUAGCUCUGGCUu -3'
miRNA:   3'- -GUCCu-----G-ACCCGUUGGAUCGAGACCGA- -5'
32385 3' -57.5 NC_007041.1 + 5530 0.86 0.004726
Target:  5'- uUAGGuccaguCgUGGGCAACCUAGCUCUGGCUu -3'
miRNA:   3'- -GUCCu-----G-ACCCGUUGGAUCGAGACCGA- -5'
32385 3' -57.5 NC_007041.1 + 5582 0.86 0.004726
Target:  5'- uUAGGuccaguCgUGGGCAACCUAGCUCUGGCUu -3'
miRNA:   3'- -GUCCu-----G-ACCCGUUGGAUCGAGACCGA- -5'
32385 3' -57.5 NC_007041.1 + 5634 0.86 0.004726
Target:  5'- uUAGGuccaguCgUGGGCAACCUAGCUCUGGCUu -3'
miRNA:   3'- -GUCCu-----G-ACCCGUUGGAUCGAGACCGA- -5'
32385 3' -57.5 NC_007041.1 + 5732 0.95 0.000781
Target:  5'- cCAGGACUGGGUAACCcAGCUCUGGCUu -3'
miRNA:   3'- -GUCCUGACCCGUUGGaUCGAGACCGA- -5'
32385 3' -57.5 NC_007041.1 + 5680 1.07 0.000089
Target:  5'- cCAGGACUGGGCAACCUAGCUCUGGCUu -3'
miRNA:   3'- -GUCCUGACCCGUUGGAUCGAGACCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.