miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32385 5' -52.1 NC_007041.1 + 5334 0.85 0.017381
Target:  5'- gUCGGCCcUAGCUaAGGcCCAGUCGUGg -3'
miRNA:   3'- -AGUCGGaAUCGAaUCCaGGUCAGCAC- -5'
32385 5' -52.1 NC_007041.1 + 5386 1.1 0.000209
Target:  5'- gUCAGCCUUAGCUUAGGUCCAGUCGUGg -3'
miRNA:   3'- -AGUCGGAAUCGAAUCCAGGUCAGCAC- -5'
32385 5' -52.1 NC_007041.1 + 5438 1.01 0.001085
Target:  5'- gUCGGCCcUAGCUUAGGUCCAGUCGUGg -3'
miRNA:   3'- -AGUCGGaAUCGAAUCCAGGUCAGCAC- -5'
32385 5' -52.1 NC_007041.1 + 5490 1.1 0.000209
Target:  5'- gUCAGCCUUAGCUUAGGUCCAGUCGUGg -3'
miRNA:   3'- -AGUCGGAAUCGAAUCCAGGUCAGCAC- -5'
32385 5' -52.1 NC_007041.1 + 5542 1.01 0.001085
Target:  5'- gUCGGCCcUAGCUUAGGUCCAGUCGUGg -3'
miRNA:   3'- -AGUCGGaAUCGAAUCCAGGUCAGCAC- -5'
32385 5' -52.1 NC_007041.1 + 5594 1.1 0.000209
Target:  5'- gUCAGCCUUAGCUUAGGUCCAGUCGUGg -3'
miRNA:   3'- -AGUCGGAAUCGAAUCCAGGUCAGCAC- -5'
32385 5' -52.1 NC_007041.1 + 5646 1.1 0.000209
Target:  5'- gUCAGCCUUAGCUUAGGUCCAGUCGUGg -3'
miRNA:   3'- -AGUCGGAAUCGAAUCCAGGUCAGCAC- -5'
32385 5' -52.1 NC_007041.1 + 10524 0.67 0.387636
Target:  5'- cUCGGUCUUGGCUU-GG-CCAGagGUc -3'
miRNA:   3'- -AGUCGGAAUCGAAuCCaGGUCagCAc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.