miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32387 5' -52.8 NC_007041.1 + 5071 1.09 0.000199
Target:  5'- cUUCCCAAUAAUGUCCCAGGCAUGGCCc -3'
miRNA:   3'- -AAGGGUUAUUACAGGGUCCGUACCGG- -5'
32387 5' -52.8 NC_007041.1 + 5024 0.72 0.156673
Target:  5'- --aCCAGUuAUGgCCCAGGCAUGGg- -3'
miRNA:   3'- aagGGUUAuUACaGGGUCCGUACCgg -5'
32387 5' -52.8 NC_007041.1 + 4879 0.68 0.296183
Target:  5'- aUUCCCAAguuagGGUGacUCUC-GGCuUGGCCa -3'
miRNA:   3'- -AAGGGUUa----UUAC--AGGGuCCGuACCGG- -5'
32387 5' -52.8 NC_007041.1 + 5021 0.78 0.049761
Target:  5'- aUUCCAAUGAUuaCCCAGGCuugGGCCa -3'
miRNA:   3'- aAGGGUUAUUAcaGGGUCCGua-CCGG- -5'
32387 5' -52.8 NC_007041.1 + 10488 0.69 0.255967
Target:  5'- gUCCCAGgaugGUCCCAaacuugacGGgAUGGUCu -3'
miRNA:   3'- aAGGGUUauuaCAGGGU--------CCgUACCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.