miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32389 3' -43.7 NC_007044.1 + 6041 0.72 0.880876
Target:  5'- aGCAC-UGGAuGUUUAGAUuCUUGUCc -3'
miRNA:   3'- aCGUGaACCUuCAAAUUUAcGAACGG- -5'
32389 3' -43.7 NC_007044.1 + 6138 1.15 0.003707
Target:  5'- cUGCACUUGGAAGUUUAAAUGCUUGCCu -3'
miRNA:   3'- -ACGUGAACCUUCAAAUUUACGAACGG- -5'
32389 3' -43.7 NC_007044.1 + 20923 0.72 0.880876
Target:  5'- aGCAC-UGGAuGUUUAGAUuCUUGUCc -3'
miRNA:   3'- aCGUGaACCUuCAAAUUUAcGAACGG- -5'
32389 3' -43.7 NC_007044.1 + 21019 1.15 0.003707
Target:  5'- cUGCACUUGGAAGUUUAAAUGCUUGCCu -3'
miRNA:   3'- -ACGUGAACCUUCAAAUUUACGAACGG- -5'
32389 3' -43.7 NC_007044.1 + 33119 0.72 0.880876
Target:  5'- aGCAC-UGGAuGUUUAGAUuCUUGUCc -3'
miRNA:   3'- aCGUGaACCUuCAAAUUUAcGAACGG- -5'
32389 3' -43.7 NC_007044.1 + 33216 1.15 0.003707
Target:  5'- cUGCACUUGGAAGUUUAAAUGCUUGCCu -3'
miRNA:   3'- -ACGUGAACCUUCAAAUUUACGAACGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.