miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32389 5' -45 NC_007044.1 + 28679 0.68 0.969079
Target:  5'- cAGGAUuuu-GUCUAAGCGUCCGuaguuuauuuGUGUg -3'
miRNA:   3'- -UCCUGuucuUAGAUUUGUAGGU----------CACG- -5'
32389 5' -45 NC_007044.1 + 28039 0.68 0.969079
Target:  5'- cAGGAUuuu-GUCUAAGCGUCCGuaguuuauuuGUGUg -3'
miRNA:   3'- -UCCUGuucuUAGAUUUGUAGGU----------CACG- -5'
32389 5' -45 NC_007044.1 + 10980 0.68 0.969079
Target:  5'- cAGGAUuuu-GUCUAAGCGUCCGuaguuuauuuGUGUg -3'
miRNA:   3'- -UCCUGuucuUAGAUUUGUAGGU----------CACG- -5'
32389 5' -45 NC_007044.1 + 11620 0.68 0.969079
Target:  5'- cAGGAUuuu-GUCUAAGCGUCCGuaguuuauuuGUGUg -3'
miRNA:   3'- -UCCUGuucuUAGAUUUGUAGGU----------CACG- -5'
32389 5' -45 NC_007044.1 + 12261 0.68 0.969079
Target:  5'- cAGGAUuuu-GUCUAAGCGUCCGuaguuuauuuGUGUg -3'
miRNA:   3'- -UCCUGuucuUAGAUUUGUAGGU----------CACG- -5'
32389 5' -45 NC_007044.1 + 12901 0.68 0.969079
Target:  5'- cAGGAUuuu-GUCUAAGCGUCCGuaguuuauuuGUGUg -3'
miRNA:   3'- -UCCUGuucuUAGAUUUGUAGGU----------CACG- -5'
32389 5' -45 NC_007044.1 + 13541 0.68 0.969079
Target:  5'- cAGGAUuuu-GUCUAAGCGUCCGuaguuuauuuGUGUg -3'
miRNA:   3'- -UCCUGuucuUAGAUUUGUAGGU----------CACG- -5'
32389 5' -45 NC_007044.1 + 26118 0.68 0.969079
Target:  5'- cAGGAUuuu-GUCUAAGCGUCCGuaguuuauuuGUGUg -3'
miRNA:   3'- -UCCUGuucuUAGAUUUGUAGGU----------CACG- -5'
32389 5' -45 NC_007044.1 + 26758 0.68 0.969079
Target:  5'- cAGGAUuuu-GUCUAAGCGUCCGuaguuuauuuGUGUg -3'
miRNA:   3'- -UCCUGuucuUAGAUUUGUAGGU----------CACG- -5'
32389 5' -45 NC_007044.1 + 27398 0.68 0.969079
Target:  5'- cAGGAUuuu-GUCUAAGCGUCCGuaguuuauuuGUGUg -3'
miRNA:   3'- -UCCUGuucuUAGAUUUGUAGGU----------CACG- -5'
32389 5' -45 NC_007044.1 + 20957 0.71 0.894455
Target:  5'- aAGG-CAAGcAUUUAAACuUCCAaGUGCa -3'
miRNA:   3'- -UCCuGUUCuUAGAUUUGuAGGU-CACG- -5'
32389 5' -45 NC_007044.1 + 33154 0.71 0.894455
Target:  5'- aAGG-CAAGcAUUUAAACuUCCAaGUGCa -3'
miRNA:   3'- -UCCuGUUCuUAGAUUUGuAGGU-CACG- -5'
32389 5' -45 NC_007044.1 + 6076 0.71 0.894455
Target:  5'- aAGG-CAAGcAUUUAAACuUCCAaGUGCa -3'
miRNA:   3'- -UCCuGUUCuUAGAUUUGuAGGU-CACG- -5'
32389 5' -45 NC_007044.1 + 820 0.76 0.608463
Target:  5'- aAGGACGaagaacagaaaucAGAGaCUuuAGCAUCCAGUGCc -3'
miRNA:   3'- -UCCUGU-------------UCUUaGAu-UUGUAGGUCACG- -5'
32389 5' -45 NC_007044.1 + 8041 0.76 0.608463
Target:  5'- aAGGACGaagaacagaaaucAGAGaCUuuAGCAUCCAGUGCc -3'
miRNA:   3'- -UCCUGU-------------UCUUaGAu-UUGUAGGUCACG- -5'
32389 5' -45 NC_007044.1 + 23397 0.78 0.500191
Target:  5'- aAGGACGaagaacagaaaucAGAGaCUuuAGCAUCCAGUGCa -3'
miRNA:   3'- -UCCUGU-------------UCUUaGAu-UUGUAGGUCACG- -5'
32389 5' -45 NC_007044.1 + 6102 1.14 0.003259
Target:  5'- uAGGACAAGAAUCUAAACAUCCAGUGCu -3'
miRNA:   3'- -UCCUGUUCUUAGAUUUGUAGGUCACG- -5'
32389 5' -45 NC_007044.1 + 20983 1.14 0.003259
Target:  5'- uAGGACAAGAAUCUAAACAUCCAGUGCu -3'
miRNA:   3'- -UCCUGUUCUUAGAUUUGUAGGUCACG- -5'
32389 5' -45 NC_007044.1 + 33180 1.14 0.003259
Target:  5'- uAGGACAAGAAUCUAAACAUCCAGUGCu -3'
miRNA:   3'- -UCCUGUUCUUAGAUUUGUAGGUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.