miRNA: 3'- uuGUGACGaCGGUG----UGugGGuAUGGU- -5'
miRNA: 3'- uuGUGACGACGG---------UGUGUGGGU-------AUGGU- -5'
miRNA: 3'- uugUGACGACGGUG----UGugGGU----AUGGU- -5'
miRNA: 3'- -UUGUGaCGACGgUGU-GUGGGUAugGu -5'
miRNA: 3'- -UUGUGACGACGGUGUGUGGGUAUGGU- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 324 | 3' | -54.8 | AC_000010.1 | + | 27519 | 0.66 | 0.559696 |
|
Target: 5'- -cCACUGCcGCCGCuuucGCugCUuUGCCAg -3' miRNA: 3'- uuGUGACGaCGGUG----UGugGGuAUGGU- -5' |
|||||||
| 324 | 3' | -54.8 | AC_000010.1 | + | 16123 | 0.68 | 0.398265 |
|
Target: 5'- -cCGCUGCUGCUgcaguggcuGCGCGCCUGcgggaccUGCCAg -3' miRNA: 3'- uuGUGACGACGG---------UGUGUGGGU-------AUGGU- -5' |
|||||||
| 324 | 3' | -54.8 | AC_000010.1 | + | 3686 | 0.7 | 0.30189 |
|
Target: 5'- --aGCUGCUGCCGCuucuGCugCCGccaaUACCGu -3' miRNA: 3'- uugUGACGACGGUG----UGugGGU----AUGGU- -5' |
|||||||
| 324 | 3' | -54.8 | AC_000010.1 | + | 13476 | 0.73 | 0.217721 |
|
Target: 5'- gGGCACcGCUGCgACAgCACCCGUugCc -3' miRNA: 3'- -UUGUGaCGACGgUGU-GUGGGUAugGu -5' |
|||||||
| 324 | 3' | -54.8 | AC_000010.1 | + | 25112 | 1.06 | 0.000691 |
|
Target: 5'- aAACACUGCUGCCACACACCCAUACCAg -3' miRNA: 3'- -UUGUGACGACGGUGUGUGGGUAUGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home