miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32566 3' -56.8 NC_007151.1 + 91568 0.66 0.892876
Target:  5'- uGCCccgGCCGUCGCUCGUUucUGAUa -3'
miRNA:   3'- -CGGuagCGGCGGCGGGCAAcuACUAg -5'
32566 3' -56.8 NC_007151.1 + 134306 0.66 0.879192
Target:  5'- uGUCggCGCCGCCGUagUCGgcGAUG-UCg -3'
miRNA:   3'- -CGGuaGCGGCGGCG--GGCaaCUACuAG- -5'
32566 3' -56.8 NC_007151.1 + 93962 0.66 0.874915
Target:  5'- cGCCAUCGCCaagaCCGCCggCGacgagacgacauucuUUGAUGAg- -3'
miRNA:   3'- -CGGUAGCGGc---GGCGG--GC---------------AACUACUag -5'
32566 3' -56.8 NC_007151.1 + 41393 0.66 0.872021
Target:  5'- uGCCGUCGCCGgCGgCgGUUucGUGGUa -3'
miRNA:   3'- -CGGUAGCGGCgGCgGgCAAc-UACUAg -5'
32566 3' -56.8 NC_007151.1 + 75642 0.66 0.872021
Target:  5'- uGCCGUUGCCGCCaaacaaaUCGUcaauaacguuauUGAUGAUg -3'
miRNA:   3'- -CGGUAGCGGCGGcg-----GGCA------------ACUACUAg -5'
32566 3' -56.8 NC_007151.1 + 55005 0.67 0.84127
Target:  5'- uGCCAUCGUCGCCGa-CGgaGucUGAUUg -3'
miRNA:   3'- -CGGUAGCGGCGGCggGCaaCu-ACUAG- -5'
32566 3' -56.8 NC_007151.1 + 62252 0.68 0.79867
Target:  5'- uGCCGUCGCCGCCGCauauagGAa---- -3'
miRNA:   3'- -CGGUAGCGGCGGCGggcaa-CUacuag -5'
32566 3' -56.8 NC_007151.1 + 117675 0.69 0.742748
Target:  5'- aGCCGaaacCGCCGCUGCCCcuGUcGGUGucGUCg -3'
miRNA:   3'- -CGGUa---GCGGCGGCGGG--CAaCUAC--UAG- -5'
32566 3' -56.8 NC_007151.1 + 127164 0.7 0.66317
Target:  5'- uUCGUCGUCGCCaGCCCGU----GAUCg -3'
miRNA:   3'- cGGUAGCGGCGG-CGGGCAacuaCUAG- -5'
32566 3' -56.8 NC_007151.1 + 105789 0.7 0.66317
Target:  5'- cGUCGUCGUCGUCGUCUGUgacgauaacGAUGAUg -3'
miRNA:   3'- -CGGUAGCGGCGGCGGGCAa--------CUACUAg -5'
32566 3' -56.8 NC_007151.1 + 44636 0.7 0.65302
Target:  5'- uUCAUCGCCGCCGUCgaGUUuAUGGUa -3'
miRNA:   3'- cGGUAGCGGCGGCGGg-CAAcUACUAg -5'
32566 3' -56.8 NC_007151.1 + 36144 0.7 0.642854
Target:  5'- cGUCAUCGCCGCCGCugCCGUUu------ -3'
miRNA:   3'- -CGGUAGCGGCGGCG--GGCAAcuacuag -5'
32566 3' -56.8 NC_007151.1 + 44266 0.7 0.642854
Target:  5'- cGUCGUCGUCGCCGCCCucGUcuucGUGGUa -3'
miRNA:   3'- -CGGUAGCGGCGGCGGG--CAac--UACUAg -5'
32566 3' -56.8 NC_007151.1 + 142066 0.7 0.642854
Target:  5'- uGCUGUCGCCGCCGCUgucaaaGaUUGccGAUCu -3'
miRNA:   3'- -CGGUAGCGGCGGCGGg-----C-AACuaCUAG- -5'
32566 3' -56.8 NC_007151.1 + 64524 0.73 0.522304
Target:  5'- uGCCGUCGCCGgCGCCaacuaUGAagauuuUGAUCa -3'
miRNA:   3'- -CGGUAGCGGCgGCGGgca--ACU------ACUAG- -5'
32566 3' -56.8 NC_007151.1 + 126389 0.75 0.394422
Target:  5'- cGCCgacGUCGCCGCCGCcgccgCCGUc-GUGAUCg -3'
miRNA:   3'- -CGG---UAGCGGCGGCG-----GGCAacUACUAG- -5'
32566 3' -56.8 NC_007151.1 + 90041 0.81 0.173447
Target:  5'- cGUCGUCGUCGUCGCCguCGUUGAUGAUa -3'
miRNA:   3'- -CGGUAGCGGCGGCGG--GCAACUACUAg -5'
32566 3' -56.8 NC_007151.1 + 4845 1.12 0.001463
Target:  5'- cGCCAUCGCCGCCGCCCGUUGAUGAUCa -3'
miRNA:   3'- -CGGUAGCGGCGGCGGGCAACUACUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.