miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32567 3' -47.7 NC_007151.1 + 20200 0.66 0.999538
Target:  5'- -gACCGUAGCAaaGGCG---AUGACAa -3'
miRNA:   3'- gaUGGCGUUGUaaCCGCaauUGCUGU- -5'
32567 3' -47.7 NC_007151.1 + 75403 0.66 0.999538
Target:  5'- aUACCGUugaaGUUGGCcGUgAACGAUAu -3'
miRNA:   3'- gAUGGCGuug-UAACCG-CAaUUGCUGU- -5'
32567 3' -47.7 NC_007151.1 + 101199 0.67 0.999113
Target:  5'- -cACCGCAACAUUGuCGUaaauuuccAUGACAc -3'
miRNA:   3'- gaUGGCGUUGUAACcGCAau------UGCUGU- -5'
32567 3' -47.7 NC_007151.1 + 1342 0.67 0.999113
Target:  5'- gUAUCGUAAUAUggguuuGCGUcGACGACAa -3'
miRNA:   3'- gAUGGCGUUGUAac----CGCAaUUGCUGU- -5'
32567 3' -47.7 NC_007151.1 + 107186 0.67 0.998912
Target:  5'- uUGCCGCAGaCGgaUGGUGU--ACGAUAa -3'
miRNA:   3'- gAUGGCGUU-GUa-ACCGCAauUGCUGU- -5'
32567 3' -47.7 NC_007151.1 + 64646 0.67 0.998912
Target:  5'- gUACUguGCGGCAUUGGCGgcAAcacCGGCu -3'
miRNA:   3'- gAUGG--CGUUGUAACCGCaaUU---GCUGu -5'
32567 3' -47.7 NC_007151.1 + 95328 0.67 0.99839
Target:  5'- gCUGCCGcCGACggUGGCGgauGCGcuCAa -3'
miRNA:   3'- -GAUGGC-GUUGuaACCGCaauUGCu-GU- -5'
32567 3' -47.7 NC_007151.1 + 43349 0.68 0.998059
Target:  5'- -gGCCGaCGACAUuguaggUGGUGUU-GCGACc -3'
miRNA:   3'- gaUGGC-GUUGUA------ACCGCAAuUGCUGu -5'
32567 3' -47.7 NC_007151.1 + 72426 0.68 0.998059
Target:  5'- uUGCCGuCAACAgucUUGGUGUgauuauUGACGAgCAg -3'
miRNA:   3'- gAUGGC-GUUGU---AACCGCA------AUUGCU-GU- -5'
32567 3' -47.7 NC_007151.1 + 56197 0.68 0.997544
Target:  5'- uCUAuCUGCGACGgucuauuguaggguUUGGCGcgAGCGACu -3'
miRNA:   3'- -GAU-GGCGUUGU--------------AACCGCaaUUGCUGu -5'
32567 3' -47.7 NC_007151.1 + 42357 0.68 0.996703
Target:  5'- uUACCGCAGCGaaUGGUGUUuauuuaccaGACAg -3'
miRNA:   3'- gAUGGCGUUGUa-ACCGCAAuug------CUGU- -5'
32567 3' -47.7 NC_007151.1 + 61315 0.69 0.994645
Target:  5'- -cGCCGUGACAUaaucgauaaUGGCGU---CGACAc -3'
miRNA:   3'- gaUGGCGUUGUA---------ACCGCAauuGCUGU- -5'
32567 3' -47.7 NC_007151.1 + 114363 0.7 0.987473
Target:  5'- gUACUugGCAAUcgUGGUGUUugccuGCGACAg -3'
miRNA:   3'- gAUGG--CGUUGuaACCGCAAu----UGCUGU- -5'
32567 3' -47.7 NC_007151.1 + 142942 0.7 0.985769
Target:  5'- gUACCGCu-CAUcGGCGcgaccacuauuUUAACGACAa -3'
miRNA:   3'- gAUGGCGuuGUAaCCGC-----------AAUUGCUGU- -5'
32567 3' -47.7 NC_007151.1 + 36314 0.71 0.983893
Target:  5'- -aACgGCAGCGgcGGCGaUGACGAUg -3'
miRNA:   3'- gaUGgCGUUGUaaCCGCaAUUGCUGu -5'
32567 3' -47.7 NC_007151.1 + 50643 0.72 0.9716
Target:  5'- -aACgGUAACGUUGGUGUcgUGGCGAUu -3'
miRNA:   3'- gaUGgCGUUGUAACCGCA--AUUGCUGu -5'
32567 3' -47.7 NC_007151.1 + 62087 0.72 0.968496
Target:  5'- aUGCgGCGGCGacGGCaUUAACGACAg -3'
miRNA:   3'- gAUGgCGUUGUaaCCGcAAUUGCUGU- -5'
32567 3' -47.7 NC_007151.1 + 104797 0.72 0.965158
Target:  5'- -cACUGUAuCGUUGGCGUU-GCGAUAu -3'
miRNA:   3'- gaUGGCGUuGUAACCGCAAuUGCUGU- -5'
32567 3' -47.7 NC_007151.1 + 26724 1.1 0.016291
Target:  5'- gCUACCGCAACAUUGGCGUUAACGACAu -3'
miRNA:   3'- -GAUGGCGUUGUAACCGCAAUUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.