miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32567 5' -60.6 NC_007151.1 + 26690 1.08 0.001219
Target:  5'- cAUUGUCACCGCCGCCACCGCCACCGCc -3'
miRNA:   3'- -UAACAGUGGCGGCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 126383 0.91 0.01918
Target:  5'- --cGUCGCCGCCGCCGCCGCCGUCGUg -3'
miRNA:   3'- uaaCAGUGGCGGCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 1413 0.86 0.042735
Target:  5'- ----cCACCGCCaccGCCACCGCCACCGCc -3'
miRNA:   3'- uaacaGUGGCGG---CGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 127171 0.84 0.055519
Target:  5'- --cGUCACCGUCGUCgacauaauccacaACCGCCACCGCa -3'
miRNA:   3'- uaaCAGUGGCGGCGG-------------UGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 1455 0.84 0.055665
Target:  5'- ----cCACCGCCaCCGCCGCCACCGCc -3'
miRNA:   3'- uaacaGUGGCGGcGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 92813 0.79 0.134075
Target:  5'- --aGUguCCGCCGCgaucgaucUACCGCCGCCGCu -3'
miRNA:   3'- uaaCAguGGCGGCG--------GUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 36135 0.76 0.199184
Target:  5'- cGUUGcCAUCGUcauCGCCGCCGCUGCCGUu -3'
miRNA:   3'- -UAACaGUGGCG---GCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 91803 0.75 0.224592
Target:  5'- uAUUGUcCGCCGCugagCGCCGCCuGCCuCCGCu -3'
miRNA:   3'- -UAACA-GUGGCG----GCGGUGG-CGGuGGCG- -5'
32567 5' -60.6 NC_007151.1 + 75636 0.74 0.270915
Target:  5'- --aGUCACUGCCGUUGCCGCCAaacaaaUCGUc -3'
miRNA:   3'- uaaCAGUGGCGGCGGUGGCGGU------GGCG- -5'
32567 5' -60.6 NC_007151.1 + 24124 0.74 0.258657
Target:  5'- ---aUCACCGCCGgaGCCGCCAUCGa -3'
miRNA:   3'- uaacAGUGGCGGCggUGGCGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 44261 0.73 0.324622
Target:  5'- cUUGUCGUCGUCGUCGCCGCCcUCGUc -3'
miRNA:   3'- uAACAGUGGCGGCGGUGGCGGuGGCG- -5'
32567 5' -60.6 NC_007151.1 + 126870 0.73 0.310488
Target:  5'- -cUGUUGCUGUugcgaUGCCGCCGCCuCCGCc -3'
miRNA:   3'- uaACAGUGGCG-----GCGGUGGCGGuGGCG- -5'
32567 5' -60.6 NC_007151.1 + 14723 0.72 0.362022
Target:  5'- cUUGaggCGCCGCUGCUggagaacuACCGCCucCCGCg -3'
miRNA:   3'- uAACa--GUGGCGGCGG--------UGGCGGu-GGCG- -5'
32567 5' -60.6 NC_007151.1 + 37187 0.72 0.34671
Target:  5'- -aUGUCAUCGacgacaucuUUGUCGCCGCCACCGg -3'
miRNA:   3'- uaACAGUGGC---------GGCGGUGGCGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 123838 0.72 0.34671
Target:  5'- -aUGUCAUCGCUGCuCACCGCCGa--- -3'
miRNA:   3'- uaACAGUGGCGGCG-GUGGCGGUggcg -5'
32567 5' -60.6 NC_007151.1 + 64517 0.72 0.377799
Target:  5'- --aGUaCGCUGCCGUCGCCGgCGCCa- -3'
miRNA:   3'- uaaCA-GUGGCGGCGGUGGCgGUGGcg -5'
32567 5' -60.6 NC_007151.1 + 54900 0.71 0.419209
Target:  5'- --cGaCACCGCCGCCGCCGCaaacuuuuaUAUCGa -3'
miRNA:   3'- uaaCaGUGGCGGCGGUGGCG---------GUGGCg -5'
32567 5' -60.6 NC_007151.1 + 76888 0.71 0.402315
Target:  5'- ---uUCGCCGCUGCUGUCGUCAUCGCu -3'
miRNA:   3'- uaacAGUGGCGGCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 120396 0.71 0.385858
Target:  5'- ---uUCGCUGCCGCCGaCGUCAUCGUg -3'
miRNA:   3'- uaacAGUGGCGGCGGUgGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 38544 0.7 0.466885
Target:  5'- uUUGUCGCCGauGCCuguguaaaagaagcCCGCCuCCGCu -3'
miRNA:   3'- uAACAGUGGCggCGGu-------------GGCGGuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.