Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32567 | 5' | -60.6 | NC_007151.1 | + | 145829 | 0.66 | 0.666949 |
Target: 5'- ---uUUAUCGUgGCCugUGCCAUUGCa -3' miRNA: 3'- uaacAGUGGCGgCGGugGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 142068 | 0.69 | 0.537371 |
Target: 5'- -cUGUCGCCGCCGCUgucaaagAUUGCCGauCUGUc -3' miRNA: 3'- uaACAGUGGCGGCGG-------UGGCGGU--GGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 134307 | 0.66 | 0.706354 |
Target: 5'- -cUGUCGgCGCCGCCGuaGUCGgCGa -3' miRNA: 3'- uaACAGUgGCGGCGGUggCGGUgGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 127171 | 0.84 | 0.055519 |
Target: 5'- --cGUCACCGUCGUCgacauaauccacaACCGCCACCGCa -3' miRNA: 3'- uaaCAGUGGCGGCGG-------------UGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 127169 | 0.68 | 0.597248 |
Target: 5'- --cGUCGCCaGcCCGUgAUCGCCAUCGa -3' miRNA: 3'- uaaCAGUGG-C-GGCGgUGGCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 126870 | 0.73 | 0.310488 |
Target: 5'- -cUGUUGCUGUugcgaUGCCGCCGCCuCCGCc -3' miRNA: 3'- uaACAGUGGCG-----GCGGUGGCGGuGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 126383 | 0.91 | 0.01918 |
Target: 5'- --cGUCGCCGCCGCCGCCGCCGUCGUg -3' miRNA: 3'- uaaCAGUGGCGGCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 125770 | 0.7 | 0.436527 |
Target: 5'- uGUUGUCGCUGCCGuUUGCCGCCcauuaaauggauGCUGUc -3' miRNA: 3'- -UAACAGUGGCGGC-GGUGGCGG------------UGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 123838 | 0.72 | 0.34671 |
Target: 5'- -aUGUCAUCGCUGCuCACCGCCGa--- -3' miRNA: 3'- uaACAGUGGCGGCG-GUGGCGGUggcg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 120396 | 0.71 | 0.385858 |
Target: 5'- ---uUCGCUGCCGCCGaCGUCAUCGUg -3' miRNA: 3'- uaacAGUGGCGGCGGUgGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 117662 | 0.66 | 0.716077 |
Target: 5'- cAUUGgccggUAgaGCCGaaACCGCCGCUGCc -3' miRNA: 3'- -UAACa----GUggCGGCggUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 97878 | 0.69 | 0.528696 |
Target: 5'- -gUGUCGCUGCCGCCGagaguucuaGCCAUaCGUc -3' miRNA: 3'- uaACAGUGGCGGCGGUgg-------CGGUG-GCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 93949 | 0.66 | 0.725731 |
Target: 5'- --aGUUGCuCGagauCGCCAUCGCCaagACCGCc -3' miRNA: 3'- uaaCAGUG-GCg---GCGGUGGCGG---UGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 92813 | 0.79 | 0.134075 |
Target: 5'- --aGUguCCGCCGCgaucgaucUACCGCCGCCGCu -3' miRNA: 3'- uaaCAguGGCGGCG--------GUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 91803 | 0.75 | 0.224592 |
Target: 5'- uAUUGUcCGCCGCugagCGCCGCCuGCCuCCGCu -3' miRNA: 3'- -UAACA-GUGGCG----GCGGUGG-CGGuGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 90050 | 0.67 | 0.617146 |
Target: 5'- cGUUGUUGUCGUCGUCGUCGUCGCCGUc -3' miRNA: 3'- -UAACAGUGGCGGCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 79509 | 0.66 | 0.696571 |
Target: 5'- --cGUCcuCCuCCGCCACCaCCACCa- -3' miRNA: 3'- uaaCAGu-GGcGGCGGUGGcGGUGGcg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 76888 | 0.71 | 0.402315 |
Target: 5'- ---uUCGCCGCUGCUGUCGUCAUCGCu -3' miRNA: 3'- uaacAGUGGCGGCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 75636 | 0.74 | 0.270915 |
Target: 5'- --aGUCACUGCCGUUGCCGCCAaacaaaUCGUc -3' miRNA: 3'- uaaCAGUGGCGGCGGUGGCGGU------GGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 64517 | 0.72 | 0.377799 |
Target: 5'- --aGUaCGCUGCCGUCGCCGgCGCCa- -3' miRNA: 3'- uaaCA-GUGGCGGCGGUGGCgGUGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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