miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 28892 0.66 0.999993
Target:  5'- -aUCGUCGauuggaacgaUgGAAAUCGUCAUggCGACGa -3'
miRNA:   3'- ucAGCAGU----------AgCUUUAGUAGUA--GCUGU- -5'
32568 3' -45.7 NC_007151.1 + 90471 0.73 0.988269
Target:  5'- cGGUCaacgcUCGUCGAcgcCAUCGUCGACAa -3'
miRNA:   3'- -UCAGc----AGUAGCUuuaGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 83142 0.75 0.963138
Target:  5'- -aUCGUCGUCGAcgaCAUgAUCGACAg -3'
miRNA:   3'- ucAGCAGUAGCUuuaGUAgUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 27569 1.1 0.026944
Target:  5'- aAGUCGUCAUCGAAAUCAUCAUCGACAu -3'
miRNA:   3'- -UCAGCAGUAGCUUUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 37554 0.67 0.999951
Target:  5'- -aUCGUCAUCGuc-UCgaaaacuacuGUCGUCGACu -3'
miRNA:   3'- ucAGCAGUAGCuuuAG----------UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 78266 0.67 0.999935
Target:  5'- -uUCGg-AUUGAAcguuAUCGUCAUCGACGa -3'
miRNA:   3'- ucAGCagUAGCUU----UAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 101541 0.67 0.999923
Target:  5'- uGUCGUCAcCGAcaaugucgacaauaaAAUUGUCAaCGACAg -3'
miRNA:   3'- uCAGCAGUaGCU---------------UUAGUAGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 86393 0.68 0.999887
Target:  5'- gAGUUGUUuUCGAAAacacgaagCAUCAUCGAg- -3'
miRNA:   3'- -UCAGCAGuAGCUUUa-------GUAGUAGCUgu -5'
32568 3' -45.7 NC_007151.1 + 123259 0.7 0.998799
Target:  5'- cGUCGacuucaaUCAUCG-AGUCAaUAUCGACAa -3'
miRNA:   3'- uCAGC-------AGUAGCuUUAGUaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 57232 0.71 0.997008
Target:  5'- gAGUCGcCAgaacaaaCGu-GUCAUCGUCGGCAa -3'
miRNA:   3'- -UCAGCaGUa------GCuuUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 123285 0.7 0.998262
Target:  5'- -aUCGaCAUCGAGAUUuaCGUCGACGa -3'
miRNA:   3'- ucAGCaGUAGCUUUAGuaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 19879 0.68 0.999686
Target:  5'- gAGUCGU--UCGGAAUCGacgacgggcuUUGUCGGCAa -3'
miRNA:   3'- -UCAGCAguAGCUUUAGU----------AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 140551 0.66 0.999986
Target:  5'- cGUCG-CcgCGGGAcgAUCGUCGGCGu -3'
miRNA:   3'- uCAGCaGuaGCUUUagUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 27727 0.7 0.997906
Target:  5'- cGUCGUCGUCG---UCGUCGUCuGaACAu -3'
miRNA:   3'- uCAGCAGUAGCuuuAGUAGUAG-C-UGU- -5'
32568 3' -45.7 NC_007151.1 + 143082 0.66 0.999977
Target:  5'- gAGUCGUCGggaUCaacgacggacgauuuGGAcUCAUCAUCGAUu -3'
miRNA:   3'- -UCAGCAGU---AG---------------CUUuAGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 17512 0.68 0.999808
Target:  5'- -cUCGUCAUUGAcuUUAUUuuuGUCGGCAg -3'
miRNA:   3'- ucAGCAGUAGCUuuAGUAG---UAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 31467 0.7 0.997906
Target:  5'- -aUCGUCAUCGAAAUUGcCAaCGAUAa -3'
miRNA:   3'- ucAGCAGUAGCUUUAGUaGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 18292 0.73 0.988269
Target:  5'- uGUUGUUgggGUUcAGAUCGUCAUCGACAa -3'
miRNA:   3'- uCAGCAG---UAGcUUUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 18538 0.67 0.999959
Target:  5'- cGUCGcCAUCGGuuUCGUCGaagagcacucgagCGACAc -3'
miRNA:   3'- uCAGCaGUAGCUuuAGUAGUa------------GCUGU- -5'
32568 3' -45.7 NC_007151.1 + 89877 0.67 0.999935
Target:  5'- --cCGUgAUCGAucagAAUCGUCGaCGACAa -3'
miRNA:   3'- ucaGCAgUAGCU----UUAGUAGUaGCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.