Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 122902 | 0.74 | 0.978301 |
Target: 5'- uGUCGUCGUUGucGUCGUCAUCcAUAu -3' miRNA: 3'- uCAGCAGUAGCuuUAGUAGUAGcUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 132261 | 0.74 | 0.980674 |
Target: 5'- cGUCGUgGUCGucGUCGUCGUCG-Cu -3' miRNA: 3'- uCAGCAgUAGCuuUAGUAGUAGCuGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 80897 | 0.73 | 0.982847 |
Target: 5'- -uUCGcCAUCGAcGAUCggCAUCGACAu -3' miRNA: 3'- ucAGCaGUAGCU-UUAGuaGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 105771 | 0.73 | 0.982847 |
Target: 5'- cGUCuGUCGUCGAuuuugcGUCGUCGUCGuCGu -3' miRNA: 3'- uCAG-CAGUAGCUu-----UAGUAGUAGCuGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 35546 | 0.73 | 0.985573 |
Target: 5'- cGGUCgGUCGUUGAAcgCGauucuaauguuuuuuUCAUCGACAu -3' miRNA: 3'- -UCAG-CAGUAGCUUuaGU---------------AGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 90471 | 0.73 | 0.988269 |
Target: 5'- cGGUCaacgcUCGUCGAcgcCAUCGUCGACAa -3' miRNA: 3'- -UCAGc----AGUAGCUuuaGUAGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 43076 | 0.73 | 0.988269 |
Target: 5'- -cUCGUCAUCacGAUCAuuaUCGUCGGCGg -3' miRNA: 3'- ucAGCAGUAGcuUUAGU---AGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 18292 | 0.73 | 0.988269 |
Target: 5'- uGUUGUUgggGUUcAGAUCGUCAUCGACAa -3' miRNA: 3'- uCAGCAG---UAGcUUUAGUAGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 140343 | 0.73 | 0.989744 |
Target: 5'- -aUCGUCcgagaGUCGA--UCAUCGUCGACu -3' miRNA: 3'- ucAGCAG-----UAGCUuuAGUAGUAGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 85903 | 0.72 | 0.992257 |
Target: 5'- -aUCGUCAgCGAAAUCGUCAuuaUCGuCAu -3' miRNA: 3'- ucAGCAGUaGCUUUAGUAGU---AGCuGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 29715 | 0.71 | 0.995813 |
Target: 5'- cGUCGUCGUCGA---CGUCAUCucCAu -3' miRNA: 3'- uCAGCAGUAGCUuuaGUAGUAGcuGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 41313 | 0.71 | 0.997008 |
Target: 5'- uGUUGcucuUCAUCGA--UCAUCAUCGAUc -3' miRNA: 3'- uCAGC----AGUAGCUuuAGUAGUAGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 57232 | 0.71 | 0.997008 |
Target: 5'- gAGUCGcCAgaacaaaCGu-GUCAUCGUCGGCAa -3' miRNA: 3'- -UCAGCaGUa------GCuuUAGUAGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 26064 | 0.71 | 0.99749 |
Target: 5'- --aCGUCAUCGAcAUCGUCga-GACAg -3' miRNA: 3'- ucaGCAGUAGCUuUAGUAGuagCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 27727 | 0.7 | 0.997906 |
Target: 5'- cGUCGUCGUCG---UCGUCGUCuGaACAu -3' miRNA: 3'- uCAGCAGUAGCuuuAGUAGUAG-C-UGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 31467 | 0.7 | 0.997906 |
Target: 5'- -aUCGUCAUCGAAAUUGcCAaCGAUAa -3' miRNA: 3'- ucAGCAGUAGCUUUAGUaGUaGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 59939 | 0.7 | 0.997906 |
Target: 5'- cGGUCGUUAgCGAcuGUUAuuuuUCAUCGACAa -3' miRNA: 3'- -UCAGCAGUaGCUu-UAGU----AGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 123285 | 0.7 | 0.998262 |
Target: 5'- -aUCGaCAUCGAGAUUuaCGUCGACGa -3' miRNA: 3'- ucAGCaGUAGCUUUAGuaGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 44641 | 0.7 | 0.998262 |
Target: 5'- uGUCGUUGcagcCGAGcgcccaucuucGUCGUCAUCGGCAa -3' miRNA: 3'- uCAGCAGUa---GCUU-----------UAGUAGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 48576 | 0.7 | 0.998538 |
Target: 5'- --aUGUUAUCGGAAUCGUCAcgaacgaUUGGCAu -3' miRNA: 3'- ucaGCAGUAGCUUUAGUAGU-------AGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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