miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 122902 0.74 0.978301
Target:  5'- uGUCGUCGUUGucGUCGUCAUCcAUAu -3'
miRNA:   3'- uCAGCAGUAGCuuUAGUAGUAGcUGU- -5'
32568 3' -45.7 NC_007151.1 + 132261 0.74 0.980674
Target:  5'- cGUCGUgGUCGucGUCGUCGUCG-Cu -3'
miRNA:   3'- uCAGCAgUAGCuuUAGUAGUAGCuGu -5'
32568 3' -45.7 NC_007151.1 + 80897 0.73 0.982847
Target:  5'- -uUCGcCAUCGAcGAUCggCAUCGACAu -3'
miRNA:   3'- ucAGCaGUAGCU-UUAGuaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 105771 0.73 0.982847
Target:  5'- cGUCuGUCGUCGAuuuugcGUCGUCGUCGuCGu -3'
miRNA:   3'- uCAG-CAGUAGCUu-----UAGUAGUAGCuGU- -5'
32568 3' -45.7 NC_007151.1 + 35546 0.73 0.985573
Target:  5'- cGGUCgGUCGUUGAAcgCGauucuaauguuuuuuUCAUCGACAu -3'
miRNA:   3'- -UCAG-CAGUAGCUUuaGU---------------AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 90471 0.73 0.988269
Target:  5'- cGGUCaacgcUCGUCGAcgcCAUCGUCGACAa -3'
miRNA:   3'- -UCAGc----AGUAGCUuuaGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 43076 0.73 0.988269
Target:  5'- -cUCGUCAUCacGAUCAuuaUCGUCGGCGg -3'
miRNA:   3'- ucAGCAGUAGcuUUAGU---AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 18292 0.73 0.988269
Target:  5'- uGUUGUUgggGUUcAGAUCGUCAUCGACAa -3'
miRNA:   3'- uCAGCAG---UAGcUUUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 140343 0.73 0.989744
Target:  5'- -aUCGUCcgagaGUCGA--UCAUCGUCGACu -3'
miRNA:   3'- ucAGCAG-----UAGCUuuAGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 85903 0.72 0.992257
Target:  5'- -aUCGUCAgCGAAAUCGUCAuuaUCGuCAu -3'
miRNA:   3'- ucAGCAGUaGCUUUAGUAGU---AGCuGU- -5'
32568 3' -45.7 NC_007151.1 + 29715 0.71 0.995813
Target:  5'- cGUCGUCGUCGA---CGUCAUCucCAu -3'
miRNA:   3'- uCAGCAGUAGCUuuaGUAGUAGcuGU- -5'
32568 3' -45.7 NC_007151.1 + 41313 0.71 0.997008
Target:  5'- uGUUGcucuUCAUCGA--UCAUCAUCGAUc -3'
miRNA:   3'- uCAGC----AGUAGCUuuAGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 57232 0.71 0.997008
Target:  5'- gAGUCGcCAgaacaaaCGu-GUCAUCGUCGGCAa -3'
miRNA:   3'- -UCAGCaGUa------GCuuUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 26064 0.71 0.99749
Target:  5'- --aCGUCAUCGAcAUCGUCga-GACAg -3'
miRNA:   3'- ucaGCAGUAGCUuUAGUAGuagCUGU- -5'
32568 3' -45.7 NC_007151.1 + 27727 0.7 0.997906
Target:  5'- cGUCGUCGUCG---UCGUCGUCuGaACAu -3'
miRNA:   3'- uCAGCAGUAGCuuuAGUAGUAG-C-UGU- -5'
32568 3' -45.7 NC_007151.1 + 31467 0.7 0.997906
Target:  5'- -aUCGUCAUCGAAAUUGcCAaCGAUAa -3'
miRNA:   3'- ucAGCAGUAGCUUUAGUaGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 59939 0.7 0.997906
Target:  5'- cGGUCGUUAgCGAcuGUUAuuuuUCAUCGACAa -3'
miRNA:   3'- -UCAGCAGUaGCUu-UAGU----AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 123285 0.7 0.998262
Target:  5'- -aUCGaCAUCGAGAUUuaCGUCGACGa -3'
miRNA:   3'- ucAGCaGUAGCUUUAGuaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 44641 0.7 0.998262
Target:  5'- uGUCGUUGcagcCGAGcgcccaucuucGUCGUCAUCGGCAa -3'
miRNA:   3'- uCAGCAGUa---GCUU-----------UAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 48576 0.7 0.998538
Target:  5'- --aUGUUAUCGGAAUCGUCAcgaacgaUUGGCAu -3'
miRNA:   3'- ucaGCAGUAGCUUUAGUAGU-------AGCUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.