miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 31467 0.7 0.997906
Target:  5'- -aUCGUCAUCGAAAUUGcCAaCGAUAa -3'
miRNA:   3'- ucAGCAGUAGCUUUAGUaGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 33554 0.82 0.730502
Target:  5'- uGUCGUCAUCGuccGAGUCuUCGUCGACc -3'
miRNA:   3'- uCAGCAGUAGC---UUUAGuAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 33704 0.83 0.666013
Target:  5'- cGUCGUCGUCGuAAUCGUCAUCGcuGCu -3'
miRNA:   3'- uCAGCAGUAGCuUUAGUAGUAGC--UGu -5'
32568 3' -45.7 NC_007151.1 + 35546 0.73 0.985573
Target:  5'- cGGUCgGUCGUUGAAcgCGauucuaauguuuuuuUCAUCGACAu -3'
miRNA:   3'- -UCAG-CAGUAGCUUuaGU---------------AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 36215 0.74 0.978301
Target:  5'- gAGUCGUUAUCGucGUCGcugaCAUUGACAc -3'
miRNA:   3'- -UCAGCAGUAGCuuUAGUa---GUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 37156 0.67 0.999906
Target:  5'- -uUUGUCGUCGAcgccaaaagacgaaAAUUuaauGUCAUCGACGa -3'
miRNA:   3'- ucAGCAGUAGCU--------------UUAG----UAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 37554 0.67 0.999951
Target:  5'- -aUCGUCAUCGuc-UCgaaaacuacuGUCGUCGACu -3'
miRNA:   3'- ucAGCAGUAGCuuuAG----------UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 37877 0.66 0.99999
Target:  5'- cGUUcgGUCAcCGAAGUCAUCAgCGAa- -3'
miRNA:   3'- uCAG--CAGUaGCUUUAGUAGUaGCUgu -5'
32568 3' -45.7 NC_007151.1 + 41313 0.71 0.997008
Target:  5'- uGUUGcucuUCAUCGA--UCAUCAUCGAUc -3'
miRNA:   3'- uCAGC----AGUAGCUuuAGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 43076 0.73 0.988269
Target:  5'- -cUCGUCAUCacGAUCAuuaUCGUCGGCGg -3'
miRNA:   3'- ucAGCAGUAGcuUUAGU---AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 44266 0.7 0.998823
Target:  5'- cGUCGUCGUCGccgcccUCGUCuUCGugGu -3'
miRNA:   3'- uCAGCAGUAGCuuu---AGUAGuAGCugU- -5'
32568 3' -45.7 NC_007151.1 + 44504 0.66 0.999981
Target:  5'- -uUCGUCGUCG---UCGUCGcuuUCGACc -3'
miRNA:   3'- ucAGCAGUAGCuuuAGUAGU---AGCUGu -5'
32568 3' -45.7 NC_007151.1 + 44641 0.7 0.998262
Target:  5'- uGUCGUUGcagcCGAGcgcccaucuucGUCGUCAUCGGCAa -3'
miRNA:   3'- uCAGCAGUa---GCUU-----------UAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 47876 0.78 0.871209
Target:  5'- gAGagGUCAUCGAGAUCcgggGUCGUCGAUu -3'
miRNA:   3'- -UCagCAGUAGCUUUAG----UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 48378 0.81 0.775699
Target:  5'- cGUCGUUaaaagcaucgacauuGUCGAAAUCGUCcgCGACAa -3'
miRNA:   3'- uCAGCAG---------------UAGCUUUAGUAGuaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 48576 0.7 0.998538
Target:  5'- --aUGUUAUCGGAAUCGUCAcgaacgaUUGGCAu -3'
miRNA:   3'- ucaGCAGUAGCUUUAGUAGU-------AGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 49115 0.75 0.955388
Target:  5'- cGUCGUCAUCGAc--CAUCGU-GACAa -3'
miRNA:   3'- uCAGCAGUAGCUuuaGUAGUAgCUGU- -5'
32568 3' -45.7 NC_007151.1 + 51474 0.76 0.9466
Target:  5'- gAGUCGUCAcugUCGuuAUCGUCAucuUCGAUg -3'
miRNA:   3'- -UCAGCAGU---AGCuuUAGUAGU---AGCUGu -5'
32568 3' -45.7 NC_007151.1 + 57232 0.71 0.997008
Target:  5'- gAGUCGcCAgaacaaaCGu-GUCAUCGUCGGCAa -3'
miRNA:   3'- -UCAGCaGUa------GCuuUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 57950 0.69 0.999499
Target:  5'- uGUUGuUCAUCGucuUCGUCuUCGACGa -3'
miRNA:   3'- uCAGC-AGUAGCuuuAGUAGuAGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.