miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 5' -43.8 NC_007151.1 + 31307 0.66 1
Target:  5'- ---uUCGAUGACGAUauauuuuUGAGAGc -3'
miRNA:   3'- uaacAGCUACUGCUAaaacu--ACUCUC- -5'
32568 5' -43.8 NC_007151.1 + 93983 0.66 1
Target:  5'- --cGaCGA-GACGAcauucUUUGAUGAGAGa -3'
miRNA:   3'- uaaCaGCUaCUGCUa----AAACUACUCUC- -5'
32568 5' -43.8 NC_007151.1 + 58232 0.66 1
Target:  5'- -aUGUCGGUGACugcucccucucacUUUGAUGaAGAGg -3'
miRNA:   3'- uaACAGCUACUGcua----------AAACUAC-UCUC- -5'
32568 5' -43.8 NC_007151.1 + 18112 0.66 0.999999
Target:  5'- aAUUGUCGAUGACGAUc-UGAa----- -3'
miRNA:   3'- -UAACAGCUACUGCUAaaACUacucuc -5'
32568 5' -43.8 NC_007151.1 + 94716 0.68 0.999979
Target:  5'- ----cCGAUGACGAUUaUGAUGAa-- -3'
miRNA:   3'- uaacaGCUACUGCUAAaACUACUcuc -5'
32568 5' -43.8 NC_007151.1 + 121992 0.68 0.999971
Target:  5'- --aGUCGAacucaUGcCGGUUUUGAcGAGAGc -3'
miRNA:   3'- uaaCAGCU-----ACuGCUAAAACUaCUCUC- -5'
32568 5' -43.8 NC_007151.1 + 26225 0.69 0.999956
Target:  5'- -aUGUCGAUGACGuuucguucgaaacaAUg--GAUGAGGa -3'
miRNA:   3'- uaACAGCUACUGC--------------UAaaaCUACUCUc -5'
32568 5' -43.8 NC_007151.1 + 119067 0.69 0.999927
Target:  5'- -aUGgUGAUGAUGGUggUGGUGAGGa -3'
miRNA:   3'- uaACaGCUACUGCUAaaACUACUCUc -5'
32568 5' -43.8 NC_007151.1 + 126128 0.71 0.999541
Target:  5'- uUUGUCGAUGACGGUggca--GAGAu -3'
miRNA:   3'- uAACAGCUACUGCUAaaacuaCUCUc -5'
32568 5' -43.8 NC_007151.1 + 39711 0.71 0.999275
Target:  5'- -aUGUUGAUGAUGAUgaugUUGAuuuuguUGAGAa -3'
miRNA:   3'- uaACAGCUACUGCUAa---AACU------ACUCUc -5'
32568 5' -43.8 NC_007151.1 + 27393 0.78 0.939362
Target:  5'- -aUGUCGAUGAUGAUUUcGAUGAcGAc -3'
miRNA:   3'- uaACAGCUACUGCUAAAaCUACU-CUc -5'
32568 5' -43.8 NC_007151.1 + 27534 1.08 0.051337
Target:  5'- aAUUGUCGAUGACGAUUUUGAUGAGAGu -3'
miRNA:   3'- -UAACAGCUACUGCUAAAACUACUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.