miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32569 3' -48.9 NC_007151.1 + 31660 0.66 0.999145
Target:  5'- aUUGAuguucggucaGGUCGuuUCCUCuaGUGGCAUCGa -3'
miRNA:   3'- cAACU----------UUAGCucAGGAG--CGCUGUAGC- -5'
32569 3' -48.9 NC_007151.1 + 67429 0.66 0.999127
Target:  5'- --cGAAGaCGAGUugcgucagaaauaUCUCGCcGACGUCGa -3'
miRNA:   3'- caaCUUUaGCUCA-------------GGAGCG-CUGUAGC- -5'
32569 3' -48.9 NC_007151.1 + 145758 0.67 0.998143
Target:  5'- uUUGucuUUGGcGUCCUCGaCGGCAUCu -3'
miRNA:   3'- cAACuuuAGCU-CAGGAGC-GCUGUAGc -5'
32569 3' -48.9 NC_007151.1 + 45710 0.67 0.998143
Target:  5'- uUUGccacucgCGAGcCgUCGCGGCAUCGu -3'
miRNA:   3'- cAACuuua---GCUCaGgAGCGCUGUAGC- -5'
32569 3' -48.9 NC_007151.1 + 123098 0.68 0.995655
Target:  5'- aUUGAAGUCGAcGUCgUCGacguaaaucuCGAUGUCGa -3'
miRNA:   3'- cAACUUUAGCU-CAGgAGC----------GCUGUAGC- -5'
32569 3' -48.9 NC_007151.1 + 21095 0.68 0.992108
Target:  5'- uUUGAGcGUCGAGuUUCUCGUucaauuccguGACAUCGg -3'
miRNA:   3'- cAACUU-UAGCUC-AGGAGCG----------CUGUAGC- -5'
32569 3' -48.9 NC_007151.1 + 106945 0.7 0.978459
Target:  5'- -aUGu--UCGAGUCUU-GCGACAUCa -3'
miRNA:   3'- caACuuuAGCUCAGGAgCGCUGUAGc -5'
32569 3' -48.9 NC_007151.1 + 113946 0.7 0.978459
Target:  5'- -aUGAAAUUGAG-CUUCGCGAUAa-- -3'
miRNA:   3'- caACUUUAGCUCaGGAGCGCUGUagc -5'
32569 3' -48.9 NC_007151.1 + 1261 0.71 0.960199
Target:  5'- -gUGGAAUCGaAGUCa--GUGGCAUCGg -3'
miRNA:   3'- caACUUUAGC-UCAGgagCGCUGUAGC- -5'
32569 3' -48.9 NC_007151.1 + 76173 0.72 0.943311
Target:  5'- aGUUGGGAUCGAGcgagaUCaCUaGCGACAUCu -3'
miRNA:   3'- -CAACUUUAGCUC-----AG-GAgCGCUGUAGc -5'
32569 3' -48.9 NC_007151.1 + 35140 0.75 0.865713
Target:  5'- --cGGAAUCGAGcUCCUCGUcguagcagcucacgGGCAUCGc -3'
miRNA:   3'- caaCUUUAGCUC-AGGAGCG--------------CUGUAGC- -5'
32569 3' -48.9 NC_007151.1 + 31882 1 0.055245
Target:  5'- uGUUGAAAUCGAGUCCUCGCGACA-CGa -3'
miRNA:   3'- -CAACUUUAGCUCAGGAGCGCUGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.