miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32570 5' -44.2 NC_007151.1 + 139396 0.68 0.999962
Target:  5'- -aUUUCGAGCGAAAUC-UUCAuGAGUa -3'
miRNA:   3'- caGAAGUUUGCUUUGGcAAGUuCUCA- -5'
32570 5' -44.2 NC_007151.1 + 96094 0.67 0.999995
Target:  5'- --aUUCGAGCucAACgCGUUCGAGGGa -3'
miRNA:   3'- cagAAGUUUGcuUUG-GCAAGUUCUCa -5'
32570 5' -44.2 NC_007151.1 + 81201 0.68 0.999962
Target:  5'- aUCUUcCAAGCGGuacGGCCGUUCGAuGuGUg -3'
miRNA:   3'- cAGAA-GUUUGCU---UUGGCAAGUU-CuCA- -5'
32570 5' -44.2 NC_007151.1 + 76677 0.66 1
Target:  5'- --aUUCAAACGAAuauCCGUUCGAu--- -3'
miRNA:   3'- cagAAGUUUGCUUu--GGCAAGUUcuca -5'
32570 5' -44.2 NC_007151.1 + 74240 0.66 1
Target:  5'- -aUUUCAAACGAcuucucgaagaAGCCGgcgUCGAGAu- -3'
miRNA:   3'- caGAAGUUUGCU-----------UUGGCa--AGUUCUca -5'
32570 5' -44.2 NC_007151.1 + 42194 0.72 0.997227
Target:  5'- aGUCUUCuacggaaucGACGAAGCCGga-GAGAGa -3'
miRNA:   3'- -CAGAAGu--------UUGCUUUGGCaagUUCUCa -5'
32570 5' -44.2 NC_007151.1 + 38469 1.09 0.043442
Target:  5'- cGUCUUCAAACGAAACCGUUCAAGAGUc -3'
miRNA:   3'- -CAGAAGUUUGCUUUGGCAAGUUCUCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.