miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32572 3' -46.6 NC_007151.1 + 80565 0.66 0.999875
Target:  5'- -uCGACAGCACcGGUcUCGUuGCcaacgUGCc -3'
miRNA:   3'- uuGCUGUCGUGuUUAuAGCA-CGa----ACG- -5'
32572 3' -46.6 NC_007151.1 + 114621 0.66 0.999836
Target:  5'- cGACGACAGC-C-AAUGUCGUGa---- -3'
miRNA:   3'- -UUGCUGUCGuGuUUAUAGCACgaacg -5'
32572 3' -46.6 NC_007151.1 + 135131 0.66 0.999836
Target:  5'- uAACGACAGCACuauuauAGUuuucAUUGUGCa--- -3'
miRNA:   3'- -UUGCUGUCGUGu-----UUA----UAGCACGaacg -5'
32572 3' -46.6 NC_007151.1 + 52207 0.66 0.999832
Target:  5'- -uCGACAuguaucuGCGCAAucAUAUCGUGgCaUGCg -3'
miRNA:   3'- uuGCUGU-------CGUGUU--UAUAGCAC-GaACG- -5'
32572 3' -46.6 NC_007151.1 + 106238 0.66 0.999727
Target:  5'- uGACGAUGGCAaGAAUAUUGUcggguaGCaUGCg -3'
miRNA:   3'- -UUGCUGUCGUgUUUAUAGCA------CGaACG- -5'
32572 3' -46.6 NC_007151.1 + 110359 0.66 0.999727
Target:  5'- -cCGACAcGUACAAauGUGUCGUGaugaaaUGCg -3'
miRNA:   3'- uuGCUGU-CGUGUU--UAUAGCACga----ACG- -5'
32572 3' -46.6 NC_007151.1 + 26498 0.67 0.999559
Target:  5'- uAGCGACGGCAUcgGUggCGgugGCggugGCg -3'
miRNA:   3'- -UUGCUGUCGUGuuUAuaGCa--CGaa--CG- -5'
32572 3' -46.6 NC_007151.1 + 30897 0.68 0.998077
Target:  5'- cGACGACAGCAUGAuugauuUCGgauuaauuUGUUUGCc -3'
miRNA:   3'- -UUGCUGUCGUGUUuau---AGC--------ACGAACG- -5'
32572 3' -46.6 NC_007151.1 + 22954 0.69 0.997226
Target:  5'- uGCGGguGCAUu--UGUCGUGUUUGa -3'
miRNA:   3'- uUGCUguCGUGuuuAUAGCACGAACg -5'
32572 3' -46.6 NC_007151.1 + 67272 0.69 0.996083
Target:  5'- gAACGAguCAGC-CAA--AUCGUGCgUGCg -3'
miRNA:   3'- -UUGCU--GUCGuGUUuaUAGCACGaACG- -5'
32572 3' -46.6 NC_007151.1 + 55067 0.69 0.995381
Target:  5'- uGCGGCGGCGgcGGUGUCGacgucGUUUGCg -3'
miRNA:   3'- uUGCUGUCGUguUUAUAGCa----CGAACG- -5'
32572 3' -46.6 NC_007151.1 + 43600 0.7 0.994581
Target:  5'- -uCGGCGGUGgGuAUAUCGUGgUUGCu -3'
miRNA:   3'- uuGCUGUCGUgUuUAUAGCACgAACG- -5'
32572 3' -46.6 NC_007151.1 + 71032 0.7 0.993671
Target:  5'- cACGACcGCACAAAUGUCaUGUUcacGCa -3'
miRNA:   3'- uUGCUGuCGUGUUUAUAGcACGAa--CG- -5'
32572 3' -46.6 NC_007151.1 + 102252 0.71 0.987135
Target:  5'- -uCGACGGCACcGAaAUCGcUGCUcGCg -3'
miRNA:   3'- uuGCUGUCGUGuUUaUAGC-ACGAaCG- -5'
32572 3' -46.6 NC_007151.1 + 70821 0.71 0.983397
Target:  5'- cGACGGCAGCGCGGAUcuaGUGUUgaacgacugggUGCu -3'
miRNA:   3'- -UUGCUGUCGUGUUUAuagCACGA-----------ACG- -5'
32572 3' -46.6 NC_007151.1 + 43664 0.71 0.983397
Target:  5'- cGACGACGGCGCGuuaGUCGU--UUGCu -3'
miRNA:   3'- -UUGCUGUCGUGUuuaUAGCAcgAACG- -5'
32572 3' -46.6 NC_007151.1 + 29490 0.72 0.973535
Target:  5'- uACGACAGCACcgucGAAUAUagcgacaGUGCcgUGCu -3'
miRNA:   3'- uUGCUGUCGUG----UUUAUAg------CACGa-ACG- -5'
32572 3' -46.6 NC_007151.1 + 146954 0.74 0.951693
Target:  5'- cGACGAUgaaGGCACGgugAAUugaAUCGUGUUUGCu -3'
miRNA:   3'- -UUGCUG---UCGUGU---UUA---UAGCACGAACG- -5'
32572 3' -46.6 NC_007151.1 + 65617 0.81 0.640115
Target:  5'- cGACGACAGUGCcGAUGUUGUGCUgaucgauugggUGCg -3'
miRNA:   3'- -UUGCUGUCGUGuUUAUAGCACGA-----------ACG- -5'
32572 3' -46.6 NC_007151.1 + 65829 1.12 0.013536
Target:  5'- aAACGACAGCACAAAUAUCGUGCUUGCg -3'
miRNA:   3'- -UUGCUGUCGUGUUUAUAGCACGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.